From AureoWiki
Jump to: navigation, search
Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 06-JUL-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0305 [new locus tag: NWMN_RS01735 ]
  • pan locus tag?: SAUPAN000621000
  • symbol: NWMN_0305
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_0305 [new locus tag: NWMN_RS01735 ]
  • symbol: NWMN_0305
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 353131..355029
  • length: 1899
  • essential: unknown

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    ATGGCTTACGGATTAATTACAAGTTTACATTCAATGACAGGTCGGAAAATAGTTGCTCAA
    CATGAGTATAACTATCGCTTGTTAGATGAAGGTATGAGCAAACTTGAGAAAATGTTTATA
    TACCATCAAAAAGAAGAAATATACGCACACTCAGCGAAACAAATTAAATACTTGAATGAC
    AGTGTTGAAGATTATTTAACGTATTTAAATGGCCGTTTTAGCAATATGATTCTAGGCCAT
    AACGGCGACGGTATCAATGAAGTAAAAGACGCGCGTATTGATAATACAGGTTATGGTCAT
    AAGACATTGCAAGATCGTTTGTATCATGATTATTCAACACTAGATGCTTTCACTAAAAAG
    GTTGAGAAAGCTGTAGATGAACACTATAAAGAATATCGAGCGACAGAATACCGATTCGAA
    CCAAAAGAGCAAGAACCGGAATTTATCACTGATTTATCGCCATATACAAATGCAGTAATG
    CAATCATTTTGGGTAGACCCTAGAACGAAAATTATTTATATGACGCAAGCTCGTCCAGGT
    AATCATTACATGTTATCTAGATTGAAGCCCAACGGACAATTTATTGATAGATTGCTTGTT
    AAAAACGGCGGTCACGGTACACACAATGCGTATAGATACATTGATGGAGAATTATGGATT
    TATTCAGCTGTATTGGACAGTAACAAAAACAACAAGTTTGTACGTTTCCAATATAGAACT
    GGAGAAATAACTTATGGTAATGAAATGCAAGATGTCATGCCGAATATATTTAACGACAGA
    TATACGTCAGCGATTTATAATCCGGTAGAAAATTTAATGATTTTTAGACGTGAATATAAA
    CCCACTGAAAGACAACTTAAGAATTCGTTGAACTTTGTTGAGGTTAGAAGTGCTGACGAT
    ATTGATAAAGGTATAGACAAAGTATTGTATCAAATGGATATACCTATGGAATACACTTCA
    GATACACAACCTATGCAAGGTATCACTTATGATGCAGGTATCTTATATTGGTATACAGGT
    GATTCGAATACAGCCAACCCTAACTACTTACAAGGTTTCGATATAAAAACAAAAGAATTG
    TTATTTAAACGACGTATCGATATTGGCGGTGTGAATAATAACTTTAAAGGAGACTTCCAA
    GAAGCTGAGGGTCTAGATATGTATTACGATCTAGAAACAGGACGCAAAGCGCTTTTAATA
    GGGGTAACTATTGGACCTGGTAACAACAGACATCACTCAATTTATTCCATCGGCCAAAGA
    GGTGTTAACCAATTCTTAAAAAACATTGCACCTCAAGTATCGATGACTGATTCAGGCGGA
    CGTGTTAAACCGTTACCAATACAGAACCCAGCATATCTAAGTGATATTACGGAAGTTGGT
    CATTACTATATCTATACGCAAGACACACAAAATGCGTTAGATTTCCCGTTACCGAAAGCG
    TTTAGAGATGCAGGTTGGTTCTTTGATGTACTGCCTGGACACTATAATGGTGCTCTAAGA
    CAAGTACTTACCAGAAACAGCACAGGTAGAAATATGCTTAAATTCGAACGTGTCATTGAC
    ATTTTCAATAAGAAAAACAACGGAGCATGGAATTTCTGTCCGCAAAACGCCGGTTATTGG
    GAACATATCCCTAAGAATATTACAAAATTATCAGATTTAAAAATCGTTGGTTTAGATTTC
    TATATCACTACTGAAGAATCAAAACGATTTACTGATTTTCCTAAAGACTTTAAAGGTATT
    GCAGGTTGGATATTAGAAGTAAAATCGAATACACCGGGTAACACAACACAAGTATTAAGA
    CGTAATAACTTCCCGTCTGCACATCAATTTTTAGTTAGAAACTTTGGTACTGGTGGCGTT
    GGTAAATGGAGTTTATTCGAGGGAAAGGTGGTTGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1899

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_0305 [new locus tag: NWMN_RS01735 ]
  • symbol: NWMN_0305
  • description: hypothetical protein
  • length: 632
  • theoretical pI: 7.89395
  • theoretical MW: 73107.9
  • GRAVY: -0.623101

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    Cell Wall and CapsuleGram-Positive cell wall componentsTeichoic and lipoteichoic acids biosynthesis Putative major teichoic acid biosynthesis protein C 
  • PFAM:

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.233
    • Ymax_pos: 20
    • Cmax: 0.331
    • Cmax_pos: 20
    • Smax: 0.32
    • Smax_pos: 18
    • Smean: 0.184
    • D: 0.214
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MAYGLITSLHSMTGRKIVAQHEYNYRLLDEGMSKLEKMFIYHQKEEIYAHSAKQIKYLNDSVEDYLTYLNGRFSNMILGHNGDGINEVKDARIDNTGYGHKTLQDRLYHDYSTLDAFTKKVEKAVDEHYKEYRATEYRFEPKEQEPEFITDLSPYTNAVMQSFWVDPRTKIIYMTQARPGNHYMLSRLKPNGQFIDRLLVKNGGHGTHNAYRYIDGELWIYSAVLDSNKNNKFVRFQYRTGEITYGNEMQDVMPNIFNDRYTSAIYNPVENLMIFRREYKPTERQLKNSLNFVEVRSADDIDKGIDKVLYQMDIPMEYTSDTQPMQGITYDAGILYWYTGDSNTANPNYLQGFDIKTKELLFKRRIDIGGVNNNFKGDFQEAEGLDMYYDLETGRKALLIGVTIGPGNNRHHSIYSIGQRGVNQFLKNIAPQVSMTDSGGRVKPLPIQNPAYLSDITEVGHYYIYTQDTQNALDFPLPKAFRDAGWFFDVLPGHYNGALRQVLTRNSTGRNMLKFERVIDIFNKKNNGAWNFCPQNAGYWEHIPKNITKLSDLKIVGLDFYITTEESKRFTDFPKDFKGIAGWILEVKSNTPGNTTQVLRRNNFPSAHQFLVRNFGTGGVGKWSLFEGKVVE

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]