From AureoWiki
Jump to: navigation, search
NCBI: 06-JUL-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0716 [new locus tag: NWMN_RS04050 ]
  • pan locus tag?: SAUPAN002654000
  • symbol: llm
  • pan gene symbol?: tagO
  • synonym:
  • product: lipophilic regulator protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_0716 [new locus tag: NWMN_RS04050 ]
  • symbol: llm
  • product: lipophilic regulator protein
  • replicon: chromosome
  • strand: +
  • coordinates: 801869..802924
  • length: 1056
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGGTTACATTATTACTAGTTGCAGTAACAATGATTGTCAGTTTGACGATAACACCAATT
    GTTATTGCAATATCGAAAAGATTAAATTTAGTTGATAAACCAAATTTTAGAAAAGTACAC
    ACTAAACCTATTTCAGTTATGGGTGGTACAGTGATTCTCTTTTCATTTTTAATAGGTATT
    TGGATTGGTCATCCTATTGAAACAGAAATCAAACCACTTATTATTGGTGCGATTATTATG
    TACGTACTTGGGCTTGTAGATGATATCTACGATTTGAAACCGTATATAAAATTGGCTGGT
    CAAATTGCCGCTGCCTTAGTAGTTGCTTTTTATGGTGTGACTATTGATTTTATTTCGTTG
    CCAATGGGTACAACGATTCATTTTGGATTTCTTAGTATTCCAATTACTGTGATTTGGATT
    GTTGCTATTACAAATGCAATTAACTTAATTGATGGACTCGATGGTTTGGCGTCGGGTGTT
    TCTGCAATCGGACTCATTACAATAGGGTTCATTGCAATTTTACAAGCTAATATTTTCATA
    ACGATGATTTGTTGTGTTTTATTAGGCTCTTTAATTGGGTTTTTATTTTACAATTTCCAT
    CCTGCCAAAATATTTTTAGGTGATAGTGGGGCTTTAATGATTGGATTTATCATCGGATTC
    CTTTCTTTACTCGGATTCAAAAATATTACAATTATTGCATTGTTCTTCCCAATTGTTATC
    TTAGCAGTTCCATTCATTGATACTTTGTTCGCAATGATTCGACGTGTGAAAAAAGGGCAG
    CATATAATGCAAGCTGATAAATCGCATTTGCATCATAAACTATTAGCTTTAGGCTACACA
    CATAGACAAACAGTATTATTAATCTATTCAATCTCTATTTTATTTAGTCTTTCGAGCATT
    ATTTTGTATGTATCGCCACCATTAGGTGTTGTATTAATGTTTGTATTAATCATATTTAGT
    ATTGAATTAATTGTTGAATTTACAGGATTAATAGATAACAACTACCGACCAATATTAAAT
    TTAATTAGTCGTAAGTCATCTCATAAAGAGGAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1056

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_0716 [new locus tag: NWMN_RS04050 ]
  • symbol: Llm
  • description: lipophilic regulator protein
  • length: 351
  • theoretical pI: 9.45815
  • theoretical MW: 38528.5
  • GRAVY: 1.12934

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Cell structureCell envelopeBiosynthesis and degradation of surface polysaccharides and lipopolysaccharidesundecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase (TIGR02380; EC 2.7.8.33; HMM-score: 152)
    Cell structureCell envelopeBiosynthesis and degradation of murein sacculus and peptidoglycanphospho-N-acetylmuramoyl-pentapeptide-transferase (TIGR00445; EC 2.7.8.13; HMM-score: 82.8)
  • TheSEED:  
    Teichoic and lipoteichoic acids biosynthesis Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.33) 
  • PFAM:
    no clan definedGlycos_transf_4; Glycosyl transferase family 4 (PF00953; HMM-score: 140.5)
    Pilin_N; Archaeal Type IV pilin, N-terminal (PF07790; HMM-score: 11.7)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 11
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: 0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: Signal peptide length 24 aa
    • Ymax: 0.474
    • Ymax_pos: 24
    • Cmax: 0.527
    • Cmax_pos: 24
    • Smax: 0.625
    • Smax_pos: 1
    • Smean: 0.485
    • D: 0.478
  • predicted transmembrane helices (TMHMM): 10

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MVTLLLVAVTMIVSLTITPIVIAISKRLNLVDKPNFRKVHTKPISVMGGTVILFSFLIGIWIGHPIETEIKPLIIGAIIMYVLGLVDDIYDLKPYIKLAGQIAAALVVAFYGVTIDFISLPMGTTIHFGFLSIPITVIWIVAITNAINLIDGLDGLASGVSAIGLITIGFIAILQANIFITMICCVLLGSLIGFLFYNFHPAKIFLGDSGALMIGFIIGFLSLLGFKNITIIALFFPIVILAVPFIDTLFAMIRRVKKGQHIMQADKSHLHHKLLALGYTHRQTVLLIYSISILFSLSSIILYVSPPLGVVLMFVLIIFSIELIVEFTGLIDNNYRPILNLISRKSSHKEE

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • llm no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]