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NCBI: 06-JUL-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0920 [new locus tag: NWMN_RS05150 ]
  • pan locus tag?: SAUPAN003257000
  • symbol: NWMN_0920
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_0920 [new locus tag: NWMN_RS05150 ]
  • symbol: NWMN_0920
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1019077..1020087
  • length: 1011
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGACTTCATTAAAAGAGAGAGATTATTTTTTTGACAACGCAAGAGCAATTTTAATATTA
    TTAGTCGTATTTGGACATATGTTACAACCCTACACTAGTGGCGATAAATATTTATCAGCA
    TTATACCTAGTTATTTATAGTTTCCATATGCCAACATTTTTGTTTATATCTGGTTATTTC
    GCGAAAAATATTGATAAACCATACTATTTAGAAAAAATTTCAAAACGTTTGATAGTACCT
    TATATGATATTTTTTGCATTCTTTTCAATTTATTATTTCTTAACAGGTAAAAGTGACGAA
    TTACAACTTGATCCTTTTAACCCAGTATTTGCGTTATGGTTTTTGATCACGCTATTTTTC
    TTTCATGTCATTTTAGTAATAGTTAGAAGATTTAATCCATATAAAGTGCTATCAGTTTCA
    ATTATTATATCTATTGGAGCAGGTTTTTCAGATAACATCGATAGCTACTTAAGCATTTCA
    AGGACAATCGTATTTTTCCCAATATTTTATCTAGGTTACATTTTCACCAAAAAACATACG
    GCTATTTTTAAAAATAAAAAACTAATACCAGTATCTATCATTACCTTTATTTTGTTTTTT
    ATCGTTTACGTGATTCATCCTATCAATGCAGATTGGTTATTGGGAAGTTCACCATATACT
    TCACTTGAAAATGAAGGACAGAGTATATTCAGTCCTTTTAAACGACTTATATTATATGGA
    ATTATATTAATCGCAATGACTGCGTTTCTAAATTTAATGTCAACAAAGAAAAAATTATAT
    ACTTATATTGGTAGTCGTACGCTATACGTATATTTATTACATGGTTTAATTATTGGCATT
    GTTAGAGGATTTGAATGGTACCCATTCGATAATCCTATATCATTAATGACTTATCTTTAT
    TTAATAAGTATATCTGTAATCATCGTATATGTATTATCTACAAACTTTGTTTGTAAATGG
    ACAAATCCAATAATTAATTTACAAAGACCATCACAGTTTAAAGATTCATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1011

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_0920 [new locus tag: NWMN_RS05150 ]
  • symbol: NWMN_0920
  • description: hypothetical protein
  • length: 336
  • theoretical pI: 9.78139
  • theoretical MW: 39255.4
  • GRAVY: 0.629167

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    membrane protein, putative 
  • PFAM:
    Acyl_transf_3 (CL0316) Acyl_transf_3; Acyltransferase family (PF01757; HMM-score: 76.1)
    no clan definedMWFE; NADH-ubiquinone oxidoreductase MWFE subunit (PF15879; HMM-score: 9.8)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.115
    • Ymax_pos: 36
    • Cmax: 0.154
    • Cmax_pos: 62
    • Smax: 0.181
    • Smax_pos: 5
    • Smean: 0.106
    • D: 0.112
  • predicted transmembrane helices (TMHMM): 10

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MTSLKERDYFFDNARAILILLVVFGHMLQPYTSGDKYLSALYLVIYSFHMPTFLFISGYFAKNIDKPYYLEKISKRLIVPYMIFFAFFSIYYFLTGKSDELQLDPFNPVFALWFLITLFFFHVILVIVRRFNPYKVLSVSIIISIGAGFSDNIDSYLSISRTIVFFPIFYLGYIFTKKHTAIFKNKKLIPVSIITFILFFIVYVIHPINADWLLGSSPYTSLENEGQSIFSPFKRLILYGIILIAMTAFLNLMSTKKKLYTYIGSRTLYVYLLHGLIIGIVRGFEWYPFDNPISLMTYLYLISISVIIVYVLSTNFVCKWTNPIINLQRPSQFKDS

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]