From AureoWiki
Jump to: navigation, search
NCBI: 06-JUL-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1373 [new locus tag: NWMN_RS07730 ]
  • pan locus tag?: SAUPAN003922000
  • symbol: NWMN_1373
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_1373 [new locus tag: NWMN_RS07730 ]
  • symbol: NWMN_1373
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1539017..1539592
  • length: 576
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGTCAGAGACATTCAATCAAATTAAAGAAAGTTTTATTGAATATTTACTTTTTCAATAT
    CGATTTAAGTCGCGTATTGCAGTTTGGGTGCTTAACTATATAAAAGTGAATGAGGCGAAA
    TTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCA
    GAAGTGGGAAGTCACGCTTCTGCAATTCAATTTACTAAGCGTAATATAAAGTTAATGAAT
    ACAAATGAAATATTTGATTATATCGCTAATCATAACTGTGCTTTTGATATTCAAATTCAC
    TTCGCAAACGTGTCAAAGCGTGAGCAAAGGCTAGATGATTTAATAGTTGCTCAACTAACG
    GAATCGCCCAGTTATCAAACTTATCTTCATGACTTAAATAGTATGGCTATAGATCGGCAT
    AAACATGCGTTATTAATAGATTACTTGTTACACAATATTGATTTAAGTTTACAGATGAAT
    GAAAAGCAACGTTTTTATCAACTAACGCAAATTTTAAATACACTCAAGCTAGTAAATAAA
    CATAATCAATTTGAGGACTTAGCAGATGACAATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    576

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_1373 [new locus tag: NWMN_RS07730 ]
  • symbol: NWMN_1373
  • description: hypothetical protein
  • length: 191
  • theoretical pI: 6.58554
  • theoretical MW: 22596.5
  • GRAVY: -0.353927

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    CBSS-393130.3.peg.129 BH1670 unknown conserved protein in B. subtilis 
  • PFAM:
    no clan definedUPF0302; UPF0302 domain (PF08864; HMM-score: 104.3)
    IDEAL; IDEAL domain (PF08858; HMM-score: 32.6)
    HTH (CL0123) E2F_TDP; E2F/DP family winged-helix DNA-binding domain (PF02319; HMM-score: 14.8)
    no clan definedDUF1433; Protein of unknown function (DUF1433) (PF07252; HMM-score: 13)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.134
    • Ymax_pos: 42
    • Cmax: 0.115
    • Cmax_pos: 69
    • Smax: 0.324
    • Smax_pos: 38
    • Smean: 0.099
    • D: 0.12
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MSETFNQIKESFIEYLLFQYRFKSRIAVWVLNYIKVNEAKLANIHFVDTKINHHETLEIAEVGSHASAIQFTKRNIKLMNTNEIFDYIANHNCAFDIQIHFANVSKREQRLDDLIVAQLTESPSYQTYLHDLNSMAIDRHKHALLIDYLLHNIDLSLQMNEKQRFYQLTQILNTLKLVNKHNQFEDLADDN

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator: CodY
    CodY (TF) important in Amino acid metabolism

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]