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NCBI: 06-JUL-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1505 [new locus tag: NWMN_RS08470 ]
  • pan locus tag?: SAUPAN004198000
  • symbol: NWMN_1505
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_1505 [new locus tag: NWMN_RS08470 ]
  • symbol: NWMN_1505
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1670844..1672073
  • length: 1230
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGGGGAGAAATTTAAAGCTTAAAAAAGAAAGTGACTTTGAATTCACAAAAAATCATAAA
    AGGTTATTATTAGGTTCTGTATTTTTGATGGCAACTTCTGCAATTGGGCCAGCATTTTTA
    ACGCAAACAGCAGTATTTACATCACAATTTTTTGCAAGTTTCGCATTTGCCATATTACTG
    TCTATCATCATTGACATTGGTGCACAAATTAATATATGGCGCATATTAGTTGTAACTGGT
    TTAAGAGGTCAAGAAATATCAAATAAAGTTGTTCCTGGGCTTGGTACTGTTATCTCAATA
    TTGATTGCATTTGGTGGTCTAGCTTTTAATATTGGTAATATTGCTGGTGCCGGTTTAGGT
    TTAAATGCAATTTTTGGATTAGATGTAAAATGGGGCGCAGCTATTACTGCAATCTTTGCA
    ATATTAATCTTTGTAAGTAAAAGTGGCCAAAAAATTATGGACGTTGTTTCAATGATTCTT
    GGTATTGTGATGATTTTAGTTGTGGCATATGTGATGTTTGTTTCTAATCCACCTTATGGT
    GATGCTTTTGTGCATACATTTGCGCCAGAACATCCAATGAAATTAGTCTTGCCCATCATT
    ACGTTAGTTGGTGGAACTGTAGGTGGTTATATTACCTTTGCAGGTGCACATCGTATATTA
    GACTCTGGCATTAAAGGTAAGCAATATTTACCATTTGTAAATCAATCAGCAATTGCTGGT
    ATTTTAACTACAGGTATTATGAGAACGTTACTATTCCTAGCGGTATTAGGAGTTGTTGTA
    ACAGGTGTGACACTAAGTTCTGAAAATCCACCAGCGTCAGTTTTTGAACACGCAATTGGA
    CCAATTGGAAAGAATATTTTTGGTATTGTGTTATTTGCTGCAGCTATGTCATCAGTAATT
    GGCTCAGCATACACAAGCGCAACATTTTTAAAAACACTTCATAAATCACTTAACGAAAGA
    AGTAATTTAATTGTGATTGTGTTTATCGTTATTTCAACAATGATTTTCTTATTTATTGGA
    AAACCAATCAGCCTTTTAATTATAGCAGGCGCGATAAATGGATGGATTTTACCTATTACG
    TTAGGTGCAATTTTGATTGCAAGTAAAAAGAAATCAATTGTTGGTGATTATAAACACCCA
    AATTGGATGTTCATCTTTGGTATCGTTGCAGTACTTGTTACAATATTGACAGGTATATTC
    TCATTCAAAGAAGTACTTCAGTTATTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1230

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_1505 [new locus tag: NWMN_RS08470 ]
  • symbol: NWMN_1505
  • description: hypothetical protein
  • length: 409
  • theoretical pI: 10.5462
  • theoretical MW: 43618
  • GRAVY: 0.980685

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    Allophanate hydrolase 2 and Biotin carboxylase cluster Uncharacterized metal ion transporter YcsG, Mn(2+)/Fe(2+) NRAMP family 
  • PFAM:
    APC (CL0062) Nramp; Natural resistance-associated macrophage protein (PF01566; HMM-score: 100.6)
    no clan definedDUF2615; Protein of unknown function (DUF2615) (PF11027; HMM-score: 9)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 11
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: 0
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.285
    • Ymax_pos: 41
    • Cmax: 0.225
    • Cmax_pos: 58
    • Smax: 0.587
    • Smax_pos: 33
    • Smean: 0.298
    • D: 0.29
  • predicted transmembrane helices (TMHMM): 11

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MGRNLKLKKESDFEFTKNHKRLLLGSVFLMATSAIGPAFLTQTAVFTSQFFASFAFAILLSIIIDIGAQINIWRILVVTGLRGQEISNKVVPGLGTVISILIAFGGLAFNIGNIAGAGLGLNAIFGLDVKWGAAITAIFAILIFVSKSGQKIMDVVSMILGIVMILVVAYVMFVSNPPYGDAFVHTFAPEHPMKLVLPIITLVGGTVGGYITFAGAHRILDSGIKGKQYLPFVNQSAIAGILTTGIMRTLLFLAVLGVVVTGVTLSSENPPASVFEHAIGPIGKNIFGIVLFAAAMSSVIGSAYTSATFLKTLHKSLNERSNLIVIVFIVISTMIFLFIGKPISLLIIAGAINGWILPITLGAILIASKKKSIVGDYKHPNWMFIFGIVAVLVTILTGIFSFKEVLQLF

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator: CcpA
    CcpA (TF) important in Carbon catabolism  RegPrecise    transcription unit transferred from N315 data RegPrecise

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]