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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 06-JUL-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1590
  • pan locus tag?: SAUPAN004322000
  • symbol: tnp
  • pan gene symbol?: tnp
  • synonym:
  • product: transposase for IS1272

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_1590
  • symbol: tnp
  • product: transposase for IS1272
  • replicon: chromosome
  • strand: -
  • coordinates: 1762474..1763280
  • length: 807
  • essential: unknown

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGAAAAATGGCCAACTTAAGCCAGGATACAATTTACAAATAGCGACAAATTCTCAATTT
    GTTTTATCCTATGACCTATTTCAAAACCCAACAGATACTAGAACATTAATCCCATTTTTA
    ACAATGATTCAAAATACCTTCGGTTATTTACCAGAGTATATTGTAGCTGATGCAGGTTAT
    GGTAGTGAGCAAAACTATATGGCTATTATAGATGATTTTAATAAAACGCCACTTATTACG
    TATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGGCATTTTCAACACTCAA
    AATTGGAAATATGACGAACTTAATAATGAATTTATATGTCCTAATAACAAAAGAATAGGT
    TTTAAAAGATATGCATACCGTAATGATAGATATGGTTTTAAACGAGACTTCAAACTATAT
    GAATGTGATGACTGTTCATCATGTTCTTTGAGACATCAATGCATGAAACCAAATTCGAAA
    TCCAATAAGAAAATCATGAAGAATTATAATTGGGAATACTTTAAAGTCCAAATTAATCAA
    AAGCTTTCTGAACCAGAAACGAAAAACATCTATAGTCAAAGAAAAATTGATGTAGAGCCT
    GCTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAATGTCAGTTCGAGGAATAAAT
    AAAGTTAAACGAGAGCTAGGTTTTGTATTGATGGCACTTAATATAAGGAAAATAGCAGCT
    CAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAAT
    AGAAATCAGCTTTTTTACATTGCCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    807

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: NWMN_1590
  • symbol: Tnp
  • description: transposase for IS1272
  • length: 268
  • theoretical pI: 10.1219
  • theoretical MW: 31713.5
  • GRAVY: -0.560448

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED:
  • PFAM:
    RNase_H (CL0219) DDE_Tnp_1; Transposase DDE domain (PF01609; HMM-score: 105.5)
    DDE_Tnp_1_6; Transposase DDE domain (PF13751; HMM-score: 86.5)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008058
    • TAT(Tat/SPI): 0.000271
    • LIPO(Sec/SPII): 0.00137
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MKNGQLKPGYNLQIATNSQFVLSYDLFQNPTDTRTLIPFLTMIQNTFGYLPEYIVADAGYGSEQNYMAIIDDFNKTPLITYGMFIKDKTRKFKSGIFNTQNWKYDELNNEFICPNNKRIGFKRYAYRNDRYGFKRDFKLYECDDCSSCSLRHQCMKPNSKSNKKIMKNYNWEYFKVQINQKLSEPETKNIYSQRKIDVEPAFGFMKAILGFTRMSVRGINKVKRELGFVLMALNIRKIAAQRAVHYKIHIKKADFYQIINRNQLFYIA

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]