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NCBI: 06-JUL-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1824 [new locus tag: NWMN_RS10475 ]
  • pan locus tag?: SAUPAN004901000
  • symbol: NWMN_1824
  • pan gene symbol?: vraT
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_1824 [new locus tag: NWMN_RS10475 ]
  • symbol: NWMN_1824
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2030865..2031566
  • length: 702
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGACACACAAATATATATCAACGCAAATGTTGATCATTTTTACTGCATTAATGATTATT
    GCCAATTTTTACTACATATTTTTTGAAAAAATTGGCTTTTTACTCGTTCTATTATTGGGA
    TGTGTATTAGTTTATGTAGGATATCTTTATTTTCATAAAATACGTGGCCTTTTGGCGTTT
    TGGATAGGCGCGCTATTAATTGCATTCACATTATTGTCTAATAAGTATACAATCATCATC
    TTGTTCGTCTTTTTATTATTACTTATTGTGCGTTATTTAATACACAAGTTTAAACCAAAA
    AAAGTAGTTGCGACGGATGAGGTTATGACTTCACCATCTTTTATTAAACAAAAGTGGTTT
    GGTGAGCAACGTACACCAGTTTATGTATATAAGTGGGAAGATGTACAAATTCAACATGGA
    ATTGGCGACCTACATATTGACTTAACAAAAGCTGCAAATATTAAGGAAAATAATACCATT
    GTTGTTAGACACATTTTAGGTAAAGTGCAGGTTATATTGCCGGTTAATTACAATATTAAT
    TTACATGTAGCTGCTTTTTATGGAAGTACTTACGTGAATGAAAAATCATATAAAGTTGAA
    AATAACAATATTCATATTGAAGAAATGATGAAACCGGATAACTATACAGTTAATATCTAC
    GTATCAACGTTTATCGGAGACGTAGAGGTGATTTATCGATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    702

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_1824 [new locus tag: NWMN_RS10475 ]
  • symbol: NWMN_1824
  • description: hypothetical protein
  • length: 233
  • theoretical pI: 9.49778
  • theoretical MW: 27204.1
  • GRAVY: 0.479399

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    flavivirus envelope glycoprotein E, stem/anchor domain (TIGR04240; HMM-score: 9.2)
  • TheSEED:  
    CBSS-176280.1.peg.1561 Cell wall-active antibiotics response protein VraT 
  • PFAM:
    no clan definedDUF2154; Cell wall-active antibiotics response 4TMS YvqF (PF09922; HMM-score: 109.1)
    MerC; MerC mercury resistance protein (PF03203; HMM-score: 8.9)
    SdpI; SdpI/YhfL protein family (PF13630; HMM-score: 6.6)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.118
    • Ymax_pos: 11
    • Cmax: 0.114
    • Cmax_pos: 22
    • Smax: 0.201
    • Smax_pos: 2
    • Smean: 0.139
    • D: 0.127
  • predicted transmembrane helices (TMHMM): 4

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MTHKYISTQMLIIFTALMIIANFYYIFFEKIGFLLVLLLGCVLVYVGYLYFHKIRGLLAFWIGALLIAFTLLSNKYTIIILFVFLLLLIVRYLIHKFKPKKVVATDEVMTSPSFIKQKWFGEQRTPVYVYKWEDVQIQHGIGDLHIDLTKAANIKENNTIVVRHILGKVQVILPVNYNINLHVAAFYGSTYVNEKSYKVENNNIHIEEMMKPDNYTVNIYVSTFIGDVEVIYR

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]