NCBI: 06-JUL-2013
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_1910 [new locus tag: NWMN_RS11010 ]
- pan locus tag?: SAUPAN005102000
- symbol: NWMN_1910
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: NWMN_1910 [new locus tag: NWMN_RS11010 ]
- symbol: NWMN_1910
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 2120345..2120830
- length: 486
- essential: unknown other strains
⊟Accession numbers[edit source | edit]
- Gene ID: 5331174 NCBI
- RefSeq: YP_001332944 NCBI
- MicrobesOnline: 3707498 MicrobesOnline
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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481ATGACTGCTGGAACACAACAAGCTATGAATTTTGAAAGTCATCGCTTATGCACGATTAAG
GCAAAGCAAGAGCTGCGAATAGGCACATGGTCAATTCTACCGTTTGACATCGAACATGAT
GCTAACGAGCCTGTGGCTTTCTTATTACAAAGTACATTAGGTTATAAGGTTCTGTATGTT
ACTGATACAAAGTATTTGAAATACAAATTTAACGGCATTACGCACATGATGTTAGAAGTT
AATTATATCTATGAACAAATGCAGGAAAACATAAAAAACGGCAGTGTGCACAGCACATTA
GCAAACAGAATTATGGAGTCTCATTTTAGCTTAGAACATGCTATCGGAATGTTAAAAGCA
AATGATTTAACTAGACTCGAAGAAATACATTTAATTCATTTAAGTAGTCAAAATTCAAAT
GCAAAATACATTAAAAGTGAAATACAAAAAGTGACGGGCGCGCCCGTTTATGTTGGAGGT
TTATAA60
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486
⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: NWMN_1910 [new locus tag: NWMN_RS11010 ]
- symbol: NWMN_1910
- description: hypothetical protein
- length: 161
- theoretical pI: 7.29216
- theoretical MW: 18348
- GRAVY: -0.231056
⊟Function[edit source | edit]
- reaction:
- TIGRFAM:
- TheSEED:
- PFAM: Metallo-HOrase (CL0381) Lactamase_B_2; Beta-lactamase superfamily domain (PF12706; HMM-score: 20.7)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular Possibility: 1
- Signal Peptide Possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- Ymax: 0.14
- Ymax_pos: 22
- Cmax: 0.14
- Cmax_pos: 22
- Smax: 0.227
- Smax_pos: 7
- Smean: 0.145
- D: 0.142
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MTAGTQQAMNFESHRLCTIKAKQELRIGTWSILPFDIEHDANEPVAFLLQSTLGYKVLYVTDTKYLKYKFNGITHMMLEVNYIYEQMQENIKNGSVHSTLANRIMESHFSLEHAIGMLKANDLTRLEEIHLIHLSSQNSNAKYIKSEIQKVTGAPVYVGGL
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]