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NCBI: 06-JUL-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1969 [new locus tag: NWMN_RS11390 ]
  • pan locus tag?: SAUPAN005331000
  • symbol: NWMN_1969
  • pan gene symbol?:
  • synonym:
  • product: S1 RNA-binding domain-containing protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_1969 [new locus tag: NWMN_RS11390 ]
  • symbol: NWMN_1969
  • product: S1 RNA-binding domain-containing protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2186991..2189141
  • length: 2151
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    ATGGACAATCAATTGATTAATTCAATCATAGAGAAATATCAATTTAGTAAAAAACAAATT
    GAAGCAGTATTAACACTGCTAGAAGAAAAAAATACAGTACCATTTATTGCGAGGTATCGA
    AAAGAGCAAACTGGTGGACTAGATGAAGTTCAAATAAAGCAAATTGATGACGAATACCAA
    TATATGGTCAATTTACAAAAACGTAAAGAAGAAGTTATCAAAAATATAGAACAGCAAGGA
    TTACTTACTGAGGAATTAAAGAAGGATATTTTAAAACAGAACAAATTACAACGTGTTGAA
    GACCTATATAGGCCTTTTAAACAAAAGAAAAAGACAAGGGCAACTGAGGCGAAACGTAAA
    GGGTTAGAGCCATTAGCGATATGGATGAAGGCACGTAAACATGAAGTCTCAATTGAAGAA
    AAAGCACAACAATTTATAAATGAAGAAGTGCAATCGGTTGAAGATGCTATCAAAGGTGCA
    CAAGATATTATTGCGGAACAAATTTCAGATAATCCTAAATATAGAACAAAAATTTTAAAA
    GATATGTATCATCAAGGTGTGTTAACTACATCTAAAAAGAAAAATGCTGAAGATGAAAAA
    GGTATTTTTGAAATGTACTATGCATATAGTGAGCCAATTAAACGCATTGCTAATCATAGA
    GTTTTAGCTGTTAATCGTGGTGAAAAAGAGAAAGTATTATCTGTAAAGTTTGAATTCGAT
    ACGACATCAGTAGAGGATTTCATTGCACGTCAAGAAATCAATCATAATAATGTAAATCGC
    AGTTATATTTTAGAGGCGATTAAAGATAGCTTGAAACGCTTAATTGTCCCTTCGATAGAG
    CGTGAAATCCATGCTGATTTAACTGAAAAAGCTGAAAATCATGCAATAGATGTTTTTAGT
    GAAAACTTAAGAAATCTATTACTGCAACCTCCAATGAAAGGTAAACAAATATTAGGCGTA
    GATCCAGCATTTAGAACAGGTTGTAAATTAGCAGTCATTAACCCATTCGGTACTTTTATA
    GCAAAAGGTGTGATTTATCCGCATCCACCAGTTTCTAAAAAAGAGGCAGCAGAGAAGGAT
    TTTGTACAAATGGTTAAAGCGTATGATGTGCAATTAATTGCAATTGGCAATGGTACTGCA
    AGTCGTGAAACAGAACAATTTGTTGCAGATTTAATTAAAAAGCATCAGTTGCCAGTACAA
    TTCATCATTGTCAATGAAGCGGGCGCTTCAGTATACTCAGCATCAGAAATTGCTAGAGAT
    GAATTTCCTGATTTTCAAGTGGAAGAAAGAAGTGCCGTATCAATTGGACGACGCGTTCAA
    GATCCATTAAGTGAATTAGTTAAAATCGATCCTAAATCTATTGGTGTCGGACAATACCAG
    CATGATGTTAATCAAAAAGCACTAGAAAATGCATTAACTTTCGTTGTTGAAACAGCAGTT
    AACCAAGTAGGTGTTGATGTCAATACAGCATCATCATCATTATTACAATATGTGTCTGGT
    CTAAGTTCGCAAATTGCTAAAAATATAATTGCATATAGAGAAGAAAATGGCGCAATAAAG
    CATAATAAAGAGTTAAGCAAGATTAAGCGTTTGGGTGCTAAAACTTTTGAGCAGAGTATA
    GGATTTTTAAGAATAGTAGACGGTTCAGAGCCATTGGATAATACATCGATTCATCCCGAA
    AGCTATAAAGTAACGTATCAGTTATTAGATAAACTCGGATTTGGTGGCAATGATTTAGGT
    AGTGATGCATTAAAAGCTAAATTAAATTCATTGGATATGGATGAACTGGCGATTGAATTA
    CAAGTCGGTGTACCTACATTAGAGGATATTATTAAATCCTTGAAAGCACCTAATCGAGAT
    CCAAGGGACGAGTTTGAAACACCAATCCTTAAATCCGATGTGCTATCAATTGAAGATTTA
    CAAGAAGGAATGAAATTGAGTGGTACAGTTAGAAATGTAGTAGATTTTGGAGCATTTGTA
    GATATAGGTGTTAAACAAGATGGACTTGTCCATGTTTCGAAACTTTCTAAGAAGTTCGTA
    AAAAATCCAATGGATATTGTCAGTGTTGGTGATATCGTTGACGTTTGGATTTACAGTATT
    GACAAAAATAAAGACAAAGTATCATTAACGATGATTGATCCACATGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2151

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_1969 [new locus tag: NWMN_RS11390 ]
  • symbol: NWMN_1969
  • description: S1 RNA-binding domain-containing protein
  • length: 716
  • theoretical pI: 6.24525
  • theoretical MW: 80933.9
  • GRAVY: -0.426397

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Genetic information processingProtein synthesisRibosomal proteins: synthesis and modificationribosomal protein bS1 (TIGR00717; HMM-score: 55.9)
    Genetic information processingTranscriptionDegradation of RNApolyribonucleotide nucleotidyltransferase (TIGR03591; EC 2.7.7.8; HMM-score: 49)
    Cellular processesCellular processesDNA transformationcomEA protein (TIGR01259; HMM-score: 40.9)
    Cellular processesCellular processesDNA transformationcompetence protein ComEA helix-hairpin-helix repeat region (TIGR00426; HMM-score: 36.6)
    guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase (TIGR02696; EC 2.7.-.-,2.7.7.8; HMM-score: 26)
    Genetic information processingMobile and extrachromosomal element functionsProphage functionsphage uncharacterized protein, C-terminal domain (TIGR01630; HMM-score: 16.1)
    Genetic information processingTranscriptionDNA-dependent RNA polymeraseDNA-directed RNA polymerase (TIGR00448; EC 2.7.7.6; HMM-score: 15.4)
  • TheSEED:  
    CBSS-393131.3.peg.612 Transcription accessory protein (S1 RNA-binding domain) 
    Cell division-ribosomal stress proteins cluster Transcription accessory protein (S1 RNA-binding domain) 
  • PFAM:
    no clan definedTex_N; Tex-like protein N-terminal domain (PF09371; HMM-score: 216)
    YqgF (CL0580) Tex_YqgF; Tex protein YqgF-like domain (PF16921; HMM-score: 182)
    HHH (CL0198) HHH_3; Helix-hairpin-helix motif (PF12836; HMM-score: 89.6)
    OB (CL0021) S1; S1 RNA binding domain (PF00575; HMM-score: 55.7)
    YqgF (CL0580) YqgF; Holliday-junction resolvase-like of SPT6 (PF14639; HMM-score: 33.1)
    HHH (CL0198) HHH_7; Helix-hairpin-helix motif (PF14635; HMM-score: 32.2)
    no clan definedDLD; Death-like domain of SPT6 (PF14878; HMM-score: 21.6)
    SRA1; Steroid receptor RNA activator (SRA1) (PF07304; HMM-score: 14.5)
    HHH (CL0198) HHH_6; Helix-hairpin-helix motif (PF14579; HMM-score: 12.9)
    HTH (CL0123) Sigma54_CBD; Sigma-54 factor, core binding domain (PF04963; HMM-score: 11.6)
    no clan definedHTH_44; Helix-turn-helix DNA-binding domain of SPT6 (PF14641; HMM-score: 10.8)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:
    NWMN_2534(arcA)arginine deiminase  [1] (data from MRSA252)
    NWMN_0959(phdA)pyruvate dehydrogenase E1 component, alpha subunit  [1] (data from MRSA252)
    NWMN_0501(rplJ)50S ribosomal protein L10  [1] (data from MRSA252)
    NWMN_2119(rpsI)30S ribosomal protein S9  [1] (data from MRSA252)

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.111
    • Ymax_pos: 23
    • Cmax: 0.112
    • Cmax_pos: 23
    • Smax: 0.147
    • Smax_pos: 8
    • Smean: 0.11
    • D: 0.111
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MDNQLINSIIEKYQFSKKQIEAVLTLLEEKNTVPFIARYRKEQTGGLDEVQIKQIDDEYQYMVNLQKRKEEVIKNIEQQGLLTEELKKDILKQNKLQRVEDLYRPFKQKKKTRATEAKRKGLEPLAIWMKARKHEVSIEEKAQQFINEEVQSVEDAIKGAQDIIAEQISDNPKYRTKILKDMYHQGVLTTSKKKNAEDEKGIFEMYYAYSEPIKRIANHRVLAVNRGEKEKVLSVKFEFDTTSVEDFIARQEINHNNVNRSYILEAIKDSLKRLIVPSIEREIHADLTEKAENHAIDVFSENLRNLLLQPPMKGKQILGVDPAFRTGCKLAVINPFGTFIAKGVIYPHPPVSKKEAAEKDFVQMVKAYDVQLIAIGNGTASRETEQFVADLIKKHQLPVQFIIVNEAGASVYSASEIARDEFPDFQVEERSAVSIGRRVQDPLSELVKIDPKSIGVGQYQHDVNQKALENALTFVVETAVNQVGVDVNTASSSLLQYVSGLSSQIAKNIIAYREENGAIKHNKELSKIKRLGAKTFEQSIGFLRIVDGSEPLDNTSIHPESYKVTYQLLDKLGFGGNDLGSDALKAKLNSLDMDELAIELQVGVPTLEDIIKSLKAPNRDPRDEFETPILKSDVLSIEDLQEGMKLSGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVDVWIYSIDKNKDKVSLTMIDPHE

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

  1. 1.0 1.1 1.2 1.3 Artem Cherkasov, Michael Hsing, Roya Zoraghi, Leonard J Foster, Raymond H See, Nikolay Stoynov, Jihong Jiang, Sukhbir Kaur, Tian Lian, Linda Jackson, Huansheng Gong, Rick Swayze, Emily Amandoron, Farhad Hormozdiari, Phuong Dao, Cenk Sahinalp, Osvaldo Santos-Filho, Peter Axerio-Cilies, Kendall Byler, William R McMaster, Robert C Brunham, B Brett Finlay, Neil E Reiner
    Mapping the protein interaction network in methicillin-resistant Staphylococcus aureus.
    J. Proteome Res.: 2011, 10(3);1139-50
    [PubMed:21166474] [WorldCat.org] [DOI] (I p)

Relevant publications[edit source | edit]