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NCBI: 06-JUL-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_2077 [new locus tag: NWMN_RS12030 ]
  • pan locus tag?: SAUPAN005566000
  • symbol: NWMN_2077
  • pan gene symbol?: htsB
  • synonym:
  • product: iron compound ABC transporter permease

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_2077 [new locus tag: NWMN_RS12030 ]
  • symbol: NWMN_2077
  • product: iron compound ABC transporter permease
  • replicon: chromosome
  • strand: -
  • coordinates: 2313202..2314233
  • length: 1032
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGGCTATAAAAGAAATAAGTAGCCAATCTGCCATAGATCATAAAAGAAAAAGACGCACA
    ACACTCACGTATATAGTGAGTTTGTGCTTTCTTTTTATTTGTATATATTTAAATATGGCG
    ATTGGTTCTTCGAAAATTAATTTTAGCGATATCATTCACTATGTTACTGGTCATACAGAT
    ACGAAAGCAACGTTTTTATTGCATAATGTACGTATGCCAAGGATGATTGCAGGGTTATTT
    ATTGGCGGTGCATTAGCGGTATCTGGTTTGTTAATGCAAGCAATGACACGCAATCCGCTA
    GCATCACCTAAAATTTTTGGTGTCAGTTCTGGTGCATCGTTTTTCATTGTATTTGTGACG
    ATTATCATTCCAGCATTAGAATATTATGCATTATATTTAGGTGTGATAGGTGCATTTATA
    GGTGGTTTAACTGTTTATACACTTTCAGGTGCTACGAAAGGTATGACACCCATTAAATTA
    GCATTGGCTGGTATGGCCATCCATTTGTTTTTTAGTAGTATGACCGAAGGTATTATTATT
    TTGAATGAGAATTCAAACGAACAAGTGATGTTTTGGCTTGTCGGTTCATTATCCAGTATG
    AAGTGGGATGAAATTTTAACCATTCTACCATGGATTATTGGTGCTTTAATTGTAACGATT
    TTTATTGGACGTCAACTAACGATAATGGAACTAGGCGATGACATTGCTAAGGGATTGGGT
    CAAAATATAAATAAAGTTAGAATTATCATTGGACTATTAGTCATTATTCTTACAGGTATG
    TCGGTGTCAGTGGCAGGACCAATTGGATTTGTTGGCTTAATCGTACCGCATATAGTCAAA
    CGCTATGTGAGTAAGAATTATTTAGTCATGATTCCATTAACATTTATTATAGGTGCAGAT
    TTGTTACTACTATCAGATGTATTAAGTCGTTTAATTACATATCCTTATGAATCACCAGTA
    GGGATTGTTACATCATTCGTAGGTGCACTTTACTTCTTATTTATAACGATTAAAGGGGTG
    AAAAGAATATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1032

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_2077 [new locus tag: NWMN_RS12030 ]
  • symbol: NWMN_2077
  • description: iron compound ABC transporter permease
  • length: 343
  • theoretical pI: 9.97316
  • theoretical MW: 37449.8
  • GRAVY: 0.868805

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    proposed F420-0 ABC transporter, permease protein (TIGR03869; HMM-score: 179.6)
  • TheSEED:  
    Iron acquisition and metabolismIron acquisition and metabolism - no subcategoryHeme, hemin uptake and utilization systems in GramPositives Heme ABC type transporter HtsABC, permease protein HtsB 
  • PFAM:
    Membrane_trans (CL0142) FecCD; FecCD transport family (PF01032; HMM-score: 329.3)
    ABC-3; ABC 3 transport family (PF00950; HMM-score: 21.5)
    no clan definedTM_helix; Conserved TM helix (PF05552; HMM-score: 14.9)
    Transgly_assoc; Transglycosylase associated protein (PF04226; HMM-score: 8.1)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.16
    • Ymax_pos: 43
    • Cmax: 0.176
    • Cmax_pos: 43
    • Smax: 0.278
    • Smax_pos: 7
    • Smean: 0.145
    • D: 0.154
  • predicted transmembrane helices (TMHMM): 8

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MAIKEISSQSAIDHKRKRRTTLTYIVSLCFLFICIYLNMAIGSSKINFSDIIHYVTGHTDTKATFLLHNVRMPRMIAGLFIGGALAVSGLLMQAMTRNPLASPKIFGVSSGASFFIVFVTIIIPALEYYALYLGVIGAFIGGLTVYTLSGATKGMTPIKLALAGMAIHLFFSSMTEGIIILNENSNEQVMFWLVGSLSSMKWDEILTILPWIIGALIVTIFIGRQLTIMELGDDIAKGLGQNINKVRIIIGLLVIILTGMSVSVAGPIGFVGLIVPHIVKRYVSKNYLVMIPLTFIIGADLLLLSDVLSRLITYPYESPVGIVTSFVGALYFLFITIKGVKRI

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator: NWMN_1406 (Fur*)
    Fur* (TF) important in Iron homeostasis  RegPrecise    transcription unit transferred from N315 data RegPrecise

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]