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NCBI: 06-JUL-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_2178 [new locus tag: NWMN_RS12585 ]
  • pan locus tag?: SAUPAN005739000
  • symbol: modB
  • pan gene symbol?: modB
  • synonym:
  • product: molybdenum ABC transporter permease

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_2178 [new locus tag: NWMN_RS12585 ]
  • symbol: modB
  • product: molybdenum ABC transporter permease
  • replicon: chromosome
  • strand: -
  • coordinates: 2400736..2401407
  • length: 672
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGCCTGACTTAACACCTTTTTGGATATCAATACGAGTTGCTGTAATCAGTACGATTATT
    GTAACGGTTTTAGGTATTTTTATATCTAAATGGTTGTATCGTCGTAAGGGTTCGTGGGTT
    AAAGTATTGGAAAGTTTATTGATATTACCTATTGTTTTGCCGCCAACGGTATTAGGTTTT
    ATTCTATTAATCATCTTCTCGCCAAGAGGACCAATCGGTCAATTCTTTGCGAATGTACTA
    CATTTACCTGTAGTGTTCACTTTGACAGGTGCTGTGATAGCATCTGTCATTGTTAGTTTT
    CCACTAATGTATCAACATACTGTGCAAGGCTTCAGAGGTATAGACACGAAAATGATTAAT
    ACAGCTAGAACGATGGGAGCAAGTGAAACGAAAATTTTCCTCAAATTAATTTTACCATTA
    GCTAAACGCTCTATTTTAGCAGGTATAATGATGAGTTTTGCTCGTGCATTAGGTGAGTTT
    GGTGCTACATTAATGGTTGCAGGATATATTCCAAATAAAACGAATACACTACCTTTAGAA
    ATATACTTCTTAGTGGAACAAGGTAGAGAAAATGAAGCGTGGTTATGGGTATTAGTGCTA
    GTCGCATTCTCTATTGTGGTTATATCTACAATTAATTTATTGAATAAAGATAAATATAAG
    GAGGTCGACTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    672

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_2178 [new locus tag: NWMN_RS12585 ]
  • symbol: ModB
  • description: molybdenum ABC transporter permease
  • length: 223
  • theoretical pI: 10.4601
  • theoretical MW: 24862.8
  • GRAVY: 0.799552

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismTransport and binding proteinsAnionsmolybdate ABC transporter, permease protein (TIGR02141; HMM-score: 260.9)
    NifC-like ABC-type porter (TIGR01581; HMM-score: 155.4)
    MetabolismTransport and binding proteinsAnionssulfate ABC transporter, permease protein (TIGR00969; HMM-score: 135.8)
    MetabolismTransport and binding proteinsAnionssulfate ABC transporter, permease protein CysT (TIGR02139; HMM-score: 123)
    MetabolismTransport and binding proteinsAnionssulfate ABC transporter, permease protein CysW (TIGR02140; HMM-score: 107.8)
    MetabolismTransport and binding proteinsAmino acids, peptides and aminesputative 2-aminoethylphosphonate ABC transporter, permease protein (TIGR03262; HMM-score: 65.1)
    2-aminoethylphosphonate ABC transport system, membrane component PhnV (TIGR03255; HMM-score: 59.8)
    MetabolismTransport and binding proteinsAnionsphosphate ABC transporter, permease protein PstC (TIGR02138; HMM-score: 51.7)
    MetabolismTransport and binding proteinsAnionsphosphate ABC transporter, permease protein PstA (TIGR00974; HMM-score: 49.8)
    2-aminoethylphosphonate ABC transporter, permease protein (TIGR03226; HMM-score: 48.2)
    MetabolismTransport and binding proteinsOtherthiamine/thiamine pyrophosphate ABC transporter, permease protein (TIGR01253; HMM-score: 29.7)
    choline ABC transporter, permease protein (TIGR03416; HMM-score: 12.3)
  • TheSEED:  
    Molybdenum cofactor biosynthesis Molybdenum ABC transporter permease protein ModB 
  • PFAM:
    BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 68.4)
    no clan definedSieB; Super-infection exclusion protein B (PF14163; HMM-score: 9.7)
    VSA (CL0656) Stevor; Subtelomeric Variable Open Reading frame (PF17410; HMM-score: 9)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.109
    • Ymax_pos: 11
    • Cmax: 0.129
    • Cmax_pos: 26
    • Smax: 0.146
    • Smax_pos: 44
    • Smean: 0.12
    • D: 0.113
  • predicted transmembrane helices (TMHMM): 5

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MPDLTPFWISIRVAVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSPRGPIGQFFANVLHLPVVFTLTGAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFGATLMVAGYIPNKTNTLPLEIYFLVEQGRENEAWLWVLVLVAFSIVVISTINLLNKDKYKEVD

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]