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NCBI: 06-JUL-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_2230 [new locus tag: NWMN_RS12855 ]
  • pan locus tag?: SAUPAN005815000
  • symbol: NWMN_2230
  • pan gene symbol?:
  • synonym:
  • product: peptidase M20/M25/M40 family protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_2230 [new locus tag: NWMN_RS12855 ]
  • symbol: NWMN_2230
  • product: peptidase M20/M25/M40 family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2451484..2452605
  • length: 1122
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGGGATTAAAAGATCAAGCTGTTACCTGGAGAAGGTATTTTCATCAATTTCCAGAACTA
    TCCGATAAAGAATTTAAGACTACACAAAAAATTAAAGATATTTTAACAGAACATCATATT
    AGAATATTAGACTTACCACTTGCGACTGGGCTTGTTGCTGAAGTGGGACAAGGTCTGAGT
    TGTATAGCTGTTCGGGCTGACATTGATGCTTTACCGATTCAAGAGCTTGTTGAACAGGAT
    TTTAAATCTGAAAATGAAGGTGTTATGCATGCGTGTGGTCATGATATTCACATGGCTAGT
    ATTTTGGCTACAGCTGTAAAATTAAAAGAAATTGAGGGCACTCTTACTGGGCGTGTTAAA
    TTCATTTTTCAATCAGCAGAAGAACTAGGACATGGCGCTTTTAAAATTATTGAAACACAT
    GCATTAAAAGATGTACAAGCAGTATTGGGTTTTCATAATGACCCATCGCGTTCGGTAGGT
    ACATTTGCAATCAAAACAGGGGCAATTACATCAGCAGTAGATCGTTTTGAGTTTCATATT
    AAAGGCGTGGGTGGTCATGCTGCAAAGCCAGAACAATGCAACGATCCAGTTATTGTGTTG
    GCGCAATTGATTAATAGTATTCAATCCATAGTTAGTAGAAATCTATCTGCGTTTGATGAA
    GCGGTAGTAACAATTGGACAAATATCATGTGGTAATACTTGGAATGTCATTGCTGATCAT
    GCGTATGTACAAGGCACAGTGCGTAGTTTTGATCCTGTGGTACGAAAGCTTGTAGAAACA
    CGATTACAAGATATTGCGGACGGATTGGCTCAAGCATATAATATGAAAATTAATTTAAAT
    TATACGCATTTACCTGGCGCTGTGATGAATGATGAGGCATTGACGCATAAAGCAATTGCA
    GTAGCCCAACATGTTGGATATAAGGTGGAAATGATGGAACAGCCGCTTACGATTGGAGAA
    GATTTTTCAGGTTATAGTCAACATTTTCCAAGTGTATTTGCGTTAATTGGTTCTCATAGT
    GAATATGATTTACATCATCCTCAATATAAACCGGATGAAAGGATTCTGGAAAAAGTACCT
    GAGTATTTTGTTGAATTTGTAAAGAGACTATTGCATGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1122

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: NWMN_2230 [new locus tag: NWMN_RS12855 ]
  • symbol: NWMN_2230
  • description: peptidase M20/M25/M40 family protein
  • length: 373
  • theoretical pI: 6.16491
  • theoretical MW: 41468
  • GRAVY: -0.0922252

Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides amidohydrolase (TIGR01891; HMM-score: 413.3)
    and 6 more
    Metabolism Amino acid biosynthesis Aspartate family succinyl-diaminopimelate desuccinylase (TIGR01246; EC 3.5.1.18; HMM-score: 45.3)
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides peptidase, ArgE/DapE family (TIGR01910; EC 3.4.-.-; HMM-score: 36.9)
    amidase, hydantoinase/carbamoylase family (TIGR01879; EC 3.5.-.-; HMM-score: 28.2)
    Metabolism Amino acid biosynthesis Glutamate family acetylornithine deacetylase (ArgE) (TIGR01892; EC 3.5.1.16; HMM-score: 28)
    Metabolism Amino acid biosynthesis Aspartate family succinyl-diaminopimelate desuccinylase (TIGR01900; EC 3.5.1.18; HMM-score: 23)
    putative selenium metabolism hydrolase (TIGR03526; HMM-score: 13.2)
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    Peptidase_MH (CL0035) Peptidase_M20; Peptidase family M20/M25/M40 (PF01546; HMM-score: 99.1)
    and 2 more
    no clan defined M20_dimer; Peptidase dimerisation domain (PF07687; HMM-score: 36.5)
    JAB (CL0366) RadC; RadC-like JAB domain (PF04002; HMM-score: 12.6)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005607
    • TAT(Tat/SPI): 0.00056
    • LIPO(Sec/SPII): 0.000224
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MGLKDQAVTWRRYFHQFPELSDKEFKTTQKIKDILTEHHIRILDLPLATGLVAEVGQGLSCIAVRADIDALPIQELVEQDFKSENEGVMHACGHDIHMASILATAVKLKEIEGTLTGRVKFIFQSAEELGHGAFKIIETHALKDVQAVLGFHNDPSRSVGTFAIKTGAITSAVDRFEFHIKGVGGHAAKPEQCNDPVIVLAQLINSIQSIVSRNLSAFDEAVVTIGQISCGNTWNVIADHAYVQGTVRSFDPVVRKLVETRLQDIADGLAQAYNMKINLNYTHLPGAVMNDEALTHKAIAVAQHVGYKVEMMEQPLTIGEDFSGYSQHFPSVFALIGSHSEYDLHHPQYKPDERILEKVPEYFVEFVKRLLHE

Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

Expression & Regulation[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]