NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_RS02320 [old locus tag: NWMN_0411 ]
- pan locus tag?: SAUPAN002145000
- symbol: NWMN_RS02320
- pan gene symbol?: lpl8
- synonym:
- product: tandem-type lipoprotein
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: NWMN_RS02320 [old locus tag: NWMN_0411 ]
- symbol: NWMN_RS02320
- product: tandem-type lipoprotein
- replicon: chromosome
- strand: +
- coordinates: 459968..460753
- length: 786
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_009641 (459968..460753) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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781ATGAAGTCTATAAAAAGGATTGGATTGTGCATTAGTTTGTTGATTTTAATCATCTTTGTT
ACATCTTGTGATGGTGATAATAAGATCATTGGAGATTCAAAAGAAGAACAAATCAAAAAG
AGCTTTGCGAAAACGTTAGATATCTACCCTATTAAGAATCTCGAGGATTTATACGACAAA
GAAGGATATCGAGATGGCGAATTTAAAAAAGATGATAAAGGTACTTGGCTAATTAGATCT
GAAATGAAAATCCAATTAAAAGGAGAAAATCTGGAATCTAGAGGAGCAGTTTTAGAAATT
AACAGAAATACTAGAACGGCTAAAGGGCATTATATTGTTAGAGAAGTTGTTGAAGATAGC
GATGGAATGACACACAATCATACAAAAAGATATCCTGTGAAAATGGAAAATAATAAAATG
ATTCCATTAAAACCAATCGATGACGAAAAAGTAAAAAAAGAAATCGAAGAATTTAACTTC
TTTGTACAATACGGGAATTTCAAAGAATTGGAAAACTATAAAGAGGACGAAGTGTCATAT
AACCCAGAAGTACCAATTTACTCTGCAAAATATCAATTGAAAAACAGTGATTACAATGTT
GAACAATTAAGGAAGCGATATAATATCCCGACGCAAAAAGCGCCCAAATTATTATTGAAA
GGCTCAGGTAATTTAAAAGGTTCATCAGTCGGATATAAAAATATTGAATTTACCTTTATT
GAAAACAAGGAAGAAAATATTTACTTCACAGATAGTATCTACTTTAATCCAAGCGAGGAT
AAATAA60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: NWMN_RS02320 [old locus tag: NWMN_0411 ]
- symbol: NWMN_RS02320
- description: tandem-type lipoprotein
- length: 261
- theoretical pI: 7.48244
- theoretical MW: 30502.5
- GRAVY: -0.796552
⊟Function[edit source | edit]
- reaction:
- TIGRFAM: Staphylococcus tandem lipoproteins (TIGR01742; HMM-score: 361.6)
- TheSEED:
- PFAM: LolA_LolB (CL0048) DUF576; Csa1 family (PF04507; HMM-score: 430.5)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 4.6
- Cellwall Score: 2.48
- Extracellular Score: 2.92
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- Ymax: 0.298
- Ymax_pos: 25
- Cmax: 0.203
- Cmax_pos: 32
- Smax: 0.732
- Smax_pos: 11
- Smean: 0.614
- D: 0.421
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MKSIKRIGLCISLLILIIFVTSCDGDNKIIGDSKEEQIKKSFAKTLDIYPIKNLEDLYDKEGYRDGEFKKDDKGTWLIRSEMKIQLKGENLESRGAVLEINRNTRTAKGHYIVREVVEDSDGMTHNHTKRYPVKMENNKMIPLKPIDDEKVKKEIEEFNFFVQYGNFKELENYKEDEVSYNPEVPIYSAKYQLKNSDYNVEQLRKRYNIPTQKAPKLLLKGSGNLKGSSVGYKNIEFTFIENKEENIYFTDSIYFNPSEDK
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- NWMN_RS02320 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]
