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NCBI: 02-MAR-2017

⊟Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS03465 [old locus tag: NWMN_0609 ]
  • pan locus tag?: SAUPAN002515000
  • symbol: NWMN_RS03465
  • pan gene symbol?: tagB
  • synonym:
  • product: teichoic acid biosynthesis protein B

⊟Genome View[edit source | edit]

⊟Gene[edit source | edit]

⊟General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_RS03465 [old locus tag: NWMN_0609 ]
  • symbol: NWMN_RS03465
  • product: teichoic acid biosynthesis protein B
  • replicon: chromosome
  • strand: +
  • coordinates: 689079..690182
  • length: 1104
  • essential: unknown

⊟Accession numbers[edit source | edit]

  • Location: NC_009641 (689079..690182) NCBI
  • MicrobesOnline:

⊟Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGAACGTTTTAATAAAGAAATTTTATCATTTGGTAGTTCGAATACTTTCTAAAATGATT
    ACGCCTCAAGTGATTGATAAACCGCATATCGTATTTATGATGACTTTTCCAGAAGATATT
    AAGCCTATCATCAAAGCATTAAATAATTCGTCGTATCAGAAAACTGTTTTAACAACACCA
    AAACAAGCGCCTTATTTATCTGAACTTAGCGACGATGTTGATGTGATAGAAATGACTAAT
    CGAACATTGGTAAAACAAATTAAGGCTTTGAAAAGCGCGCAGATGATTATTATCGATAAT
    TATTACCTATTACTAGGTGGATATAATAAGACTTCTAATCAACACATTGTTCAAACGTGG
    CATGCAAGTGGTGCATTAAAAAACTTTGGCTTAACAGATCATCAAGTCGATGTGTCTGAC
    AAGGCAATGGTTCAGCAGTACCGTAAAGTTTATCAAGCGACGGATTTTTACTTAGTGGGT
    TGTGAACAAATGTCACAATGTTTTAAACAGTCTTTAGGTGCAACAGAAGAGCAAATGCTG
    TATTTTGGGCTTCCGAGAATTAATAAATATTACACAGCTGATAGAGCAACGGTTAAGGCA
    GAGTTAAAGGATAAATATGGAATTACAAATAAGTTGGTATTATATGTACCAACATATAGA
    GAAGATAAAGCAGATAATAGGGCTATTGATAAAGCTTATTTTGAAAAATGTTTACCAGGA
    TATACACTGATTAATAAATTACATCCATCAATTGAAGATTCAGACATTGATGACGTATCT
    TCAATCGACACGTCTACATTAATGCTAATGTCAGATATAATTATTAGCGACTATAGTTCG
    CTGCCAATAGAAGCTAGCTTGTTAGATATTCCAACTATATTTTATGTGTATGATGAAGGA
    ACATATGATCAGGTGAGAGGCCTGAATCAATTTTACAAAGCAATACCGGATAGCTACAAA
    GTGTATACTGAAGAAGATTTAATAATGACGATACAAGAAAAAGAACATCTATTAAGTCCG
    TTATTTAAAGATTGGCATAAGTATAATACTGATAAAAGTTTACATCAGCTCACAGAATAT
    ATAGATAAGATGGTGACAAAATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1104

⊟Protein[edit source | edit]

⊟General[edit source | edit]

  • locus tag: NWMN_RS03465 [old locus tag: NWMN_0609 ]
  • symbol: NWMN_RS03465
  • description: teichoic acid biosynthesis protein B
  • length: 367
  • theoretical pI: 6.24812
  • theoretical MW: 42435.6
  • GRAVY: -0.291008

⊟Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Cell structureCell envelopeBiosynthesis and degradation of surface polysaccharides and lipopolysaccharidessurface carbohydrate biosynthesis protein (TIGR04396; HMM-score: 21.6)
  • TheSEED:
  • PFAM:
    GT-B (CL0113) Glyphos_transf; CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase (PF04464; HMM-score: 149.2)

⊟Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

⊟Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.23
    • Ymax_pos: 14
    • Cmax: 0.115
    • Cmax_pos: 27
    • Smax: 0.648
    • Smax_pos: 7
    • Smean: 0.531
    • D: 0.347
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit source | edit]

  • GI: 447024347 NCBI
  • RefSeq: WP_001101603 NCBI
  • UniProt:

⊟Protein sequence[edit source | edit]

  • MNVLIKKFYHLVVRILSKMITPQVIDKPHIVFMMTFPEDIKPIIKALNNSSYQKTVLTTPKQAPYLSELSDDVDVIEMTNRTLVKQIKALKSAQMIIIDNYYLLLGGYNKTSNQHIVQTWHASGALKNFGLTDHQVDVSDKAMVQQYRKVYQATDFYLVGCEQMSQCFKQSLGATEEQMLYFGLPRINKYYTADRATVKAELKDKYGITNKLVLYVPTYREDKADNRAIDKAYFEKCLPGYTLINKLHPSIEDSDIDDVSSIDTSTLMLMSDIIISDYSSLPIEASLLDIPTIFYVYDEGTYDQVRGLNQFYKAIPDSYKVYTEEDLIMTIQEKEHLLSPLFKDWHKYNTDKSLHQLTEYIDKMVTK

⊟Experimental data[edit source | edit]

  • experimentally validated: no data available

⊟Expression & Regulation[edit source | edit]

⊟Operon[edit source | edit]

  • NWMN_RS03465 no polycistronic organisation predicted

⊟Regulation[edit source | edit]

  • sigma factor:
  • regulator:

⊟Transcription pattern[edit source | edit]

⊟Protein synthesis (provided by Aureolib)[edit source | edit]

⊟Protein stability[edit source | edit]

  • half-life: no data available

⊟Biological Material[edit source | edit]

⊟Mutants[edit source | edit]

⊟Expression vector[edit source | edit]

⊟lacZ fusion[edit source | edit]

⊟GFP fusion[edit source | edit]

⊟two-hybrid system[edit source | edit]

⊟FLAG-tag construct[edit source | edit]

⊟Antibody[edit source | edit]

⊟Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

⊟Literature[edit source | edit]

⊟References[edit source | edit]

⊟Relevant publications[edit source | edit]

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