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NCBI: 02-MAR-2017

⊟Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS07155 [old locus tag: NWMN_1269 ]
  • pan locus tag?: SAUPAN003744000
  • symbol: NWMN_RS07155
  • pan gene symbol?: alsT
  • synonym:
  • product: alanine:cation symporter family protein

⊟Genome View[edit source | edit]

⊟Gene[edit source | edit]

⊟General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_RS07155 [old locus tag: NWMN_1269 ]
  • symbol: NWMN_RS07155
  • product: alanine:cation symporter family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1396804..1398264
  • length: 1461
  • essential: unknown

⊟Accession numbers[edit source | edit]

  • Location: NC_009641 (1396804..1398264) NCBI
  • MicrobesOnline:

⊟Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    TTGAAAGATTTCGATAGTTTAATACCTGGATGGTTTAAAGAATTTGTCCATGTTGGTACC
    GATTTAATATGGTCTCAATATTTAATTGGTCTATTATTGACAGCTGGATTCTTCTTTACG
    ATTAGTTCTAAATTCGTTCAATTACGAATGTTACCTGAAATGTTTAGAGCTTTAGTAGAA
    CGTCCAGAAACTTTAGAAGATGGTAAGAAGGGTATTTCGCCATTCCAAGCATTTGCGATT
    AGTGCTGGTTCGAGAGTTGGTACTGGTAATATTGCTGGTGTTGCGACTGCGATTGTTTTA
    GGCGGTCCAGGTGCAGTATTTTGGATGTGGGTTATTGCATTTATAGGTGCAGCGAGTGCA
    TTTATAGAAGCGACTTTGGCTCAGGTTTATAAAGTACATGATAAAGATGGTGGATTCCGT
    GGTGGTCCAGCTTACTATATTACTAAAGGTTTAAATCAAAAATGGCTAGGTATCGTATTT
    GCGATTTTAATTACAATTACATTTGCATTTGTATTTAACACAGTGCAATCTAATACAATT
    GCGGAGTCGTTAAATACGCAATATAATATTAGTCCAGTAATCACAGGTATTATTTTAGCA
    ATCGTAACAGCTATTATTATATTTGGTGGTGTACGTAGTATTGCTACGTTATCTTCGTTA
    ATTGTACCGATTATGGCTATCATTTACATTGGTATGGTTTTAGTAATATTGCTATTTAAT
    TTAGATCAAATTGTTCCTATGATAGGTACGATTATTAAAAGTGCATTTGGTATCGAACAA
    GTAACTGGTGGCGCTGTAGGTGCTGCGGTTCTTCAAGGTATCAAACGTGGTTTATTCTCT
    AACGAAGCTGGTATGGGTTCTGCGCCGAATGCAGCGGCAACTGCTGCCGTACCACACCCT
    GTTAAGCAAGGTTTAATCCAATCATTAGGTGTGTTCTTTGATACAATGTTGGTTTGTACA
    GCAACTGCAATCATGATTTTACTATATTCAGGACTGAAATTTGGTGATAACGCACCTCAA
    GGTGTTGCAGTTACTCAATCAGCACTTAATGAGCATTTAGGTTCTGCTGGAGGTATTTTC
    TTAACAATAGCAGTTACACTGTTTGCATTTTCATCTGTTGTAGGTAATTACTATTACGGT
    CAATCTAATATTGAATTTTTATCAACAAACCGTGTAATATTATTTATCTTTAGATGTCTT
    GTTGTAGTACTTGTCTTTGTCGGTGCAGTTGTAAAAACAGAAACAGTATGGAATACGGCA
    GACTTATTTATGGGCTTAATGGCAATTGTAAACATTATTTCCATTATAGGACTGTCCAAT
    GTAGCTTTTGCATTGATGAAAGATTATCAAAAGCAGAAAAAAGAAGGCAAGAACCCTGTC
    TTTAAACCTGAAAACTTAGAAATTAACTTATTTGGAATTAGTGCTTGGGGCGCTAACAAA
    TATAAGAACTCTGATAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1461

⊟Protein[edit source | edit]

⊟General[edit source | edit]

  • locus tag: NWMN_RS07155 [old locus tag: NWMN_1269 ]
  • symbol: NWMN_RS07155
  • description: alanine:cation symporter family protein
  • length: 486
  • theoretical pI: 9.31622
  • theoretical MW: 52141
  • GRAVY: 0.687654

⊟Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    amino acid carrier protein (TIGR00835; HMM-score: 508.5)
    phenylacetic acid degradation protein PaaD (TIGR02286; HMM-score: 16.7)
    exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (TIGR03025; HMM-score: 5.8)
  • TheSEED:
  • PFAM:
    APC (CL0062) Na_Ala_symp; Sodium:alanine symporter family (PF01235; HMM-score: 544.3)

⊟Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

⊟Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.103
    • Ymax_pos: 69
    • Cmax: 0.107
    • Cmax_pos: 46
    • Smax: 0.119
    • Smax_pos: 68
    • Smean: 0.059
    • D: 0.086
  • predicted transmembrane helices (TMHMM): 9

⊟Accession numbers[edit source | edit]

  • GI: 446573814 NCBI
  • RefSeq: WP_000651160 NCBI
  • UniProt:

⊟Protein sequence[edit source | edit]

  • MKDFDSLIPGWFKEFVHVGTDLIWSQYLIGLLLTAGFFFTISSKFVQLRMLPEMFRALVERPETLEDGKKGISPFQAFAISAGSRVGTGNIAGVATAIVLGGPGAVFWMWVIAFIGAASAFIEATLAQVYKVHDKDGGFRGGPAYYITKGLNQKWLGIVFAILITITFAFVFNTVQSNTIAESLNTQYNISPVITGIILAIVTAIIIFGGVRSIATLSSLIVPIMAIIYIGMVLVILLFNLDQIVPMIGTIIKSAFGIEQVTGGAVGAAVLQGIKRGLFSNEAGMGSAPNAAATAAVPHPVKQGLIQSLGVFFDTMLVCTATAIMILLYSGLKFGDNAPQGVAVTQSALNEHLGSAGGIFLTIAVTLFAFSSVVGNYYYGQSNIEFLSTNRVILFIFRCLVVVLVFVGAVVKTETVWNTADLFMGLMAIVNIISIIGLSNVAFALMKDYQKQKKEGKNPVFKPENLEINLFGISAWGANKYKNSDK

⊟Experimental data[edit source | edit]

  • experimentally validated: no data available

⊟Expression & Regulation[edit source | edit]

⊟Operon[edit source | edit]

  • NWMN_RS07155 no polycistronic organisation predicted

⊟Regulation[edit source | edit]

  • sigma factor:
  • regulator:

⊟Transcription pattern[edit source | edit]

⊟Protein synthesis (provided by Aureolib)[edit source | edit]

⊟Protein stability[edit source | edit]

  • half-life: no data available

⊟Biological Material[edit source | edit]

⊟Mutants[edit source | edit]

⊟Expression vector[edit source | edit]

⊟lacZ fusion[edit source | edit]

⊟GFP fusion[edit source | edit]

⊟two-hybrid system[edit source | edit]

⊟FLAG-tag construct[edit source | edit]

⊟Antibody[edit source | edit]

⊟Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

⊟Literature[edit source | edit]

⊟References[edit source | edit]

⊟Relevant publications[edit source | edit]

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