From AureoWiki
Jump to: navigation, search
Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS10160 [old locus tag: NWMN_1777 ]
  • pan locus tag?: SAUPAN001713000
  • symbol: NWMN_RS10160
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_RS10160 [old locus tag: NWMN_1777 ]
  • symbol: NWMN_RS10160
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1989036..1990946
  • length: 1911
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_009641 (1989036..1990946) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    ATGGATAACAAATTAATTACAGACTTAAGTAGAGTTTTCGATTACAGATATGTAGATGAA
    AATGAGTATAATTTCAAGCTTATTTCAGACATGCTGACTGATTTTAATTTCTCTCTTGAA
    TACCATAGAAATAAAGAGGTATTTGCACATAATGGAGAGCAAATAAAGTATGAGCATTTA
    AATGTCACAAGTAGCGTCTCTGATTTTTTAACGTATCTAAACGGCCGTTTCAGCAATATG
    GTACTAGGTCATAACGGCGACGGTATCAACGAAGTAAAAGACGCGCGTGTTGATAATACT
    GGTTATGATCATAAGACATTGCAAGATCGTTTGTATCATGATTATTCAACACTAGATGCT
    TTCACTAAAAAGGTTGAGAAAGCTGTAGATGAAAACTATAAAGAATATCGAGCTACAGAA
    TACCGATTCGAACCAAAAGAGCAAGAACCGGAATTCATCACAGATTTATCGCCATATACT
    AACGCAGTAATGCAATCATTTTGGGTAGACCCTAGAACGAAAATTATTTATATGACGCAA
    GCTCGTCCAGGTAATCATTACATGTTATCTAGATTGAAGCCCAACGGACAATTTATTGAT
    AGATTGCTTGTTAAAAACGGCGGTCACGGTACACACAATGCGTATAGATACATTGATGGA
    GAATTATGGATTTATTCAGCTGTATTGGACAGTAACAAAAACAACAAGTTTGTACGTTTC
    CAATATAGAACTGGAGAAATAACTTATGGTAATGAAATGCAAGATGTCATGCCGAATATA
    TTTAACGACAGATATACGTCAGCGATTTATAATCCTATAGAAAATTTAATGATTTTCAGA
    CGTGAATATAAAGCTTCTGAAAGACAAGCTAAGAATTCATTGAATTTCATTGAAGTAAGA
    AGTGCTGACGATATTGATAAAGGTATAGACAAAGTATTGTATCAAATGGATATACCTATG
    GAATACACTTCAGATACACAACCTATGCAAGGTATCACTTATGATGCAGGTATCTTATAT
    TGGTATACAGGTGATTCGAATACAGCCAACCCTAACTACTTACAAGGTTTCGATATAAAA
    ACAAAAGAATTGTTATTTAAACGACGTATCGATATTGGCGGTGTGAATAATAACTTTAAA
    GGAGACTTCCAAGAAGCTGAGGGTCTAGATATGTATTACGATCTAGAAACAGGACGTAAA
    GCACTTTTAATAGGGGTAACTATTGGACCTGGTAATAACAGACATCACTCAATTTATTCT
    ATCGGCCAAAGAGGTGTTAACCAATTCTTAAAAAACATTGCACCTCAAGTATCGATGACT
    GATTCAGGTGGACGTGTTAAACCGTTACCAATACAGAACCCAGCATATCTAAGTGATATT
    ACGGAAGTTGGTCATTACTATATCTATACGCAAGACACACAAAATGCATTAGATTTCCCG
    TTACCGAAAGCGTTTAGAGATGCAGGGTGGTTCTTGGATGTACTGCCTGGACACTATAAT
    GGTGCTCTAAGACAAGTACTTACCAGAAACAGCACAGGTAGAAATATGCTTAAATTCGAA
    CGTGTCATTGACATTTTCAATAAGAAAAACAACGGAGCATGGAATTTCTGTCCGCAAAAC
    GCCGGTTATTGGGAACATATCCCTAAGAGTATTACAAAATTATCAGATTTAAAAATCGTT
    GGTTTAGATTTCTATATCACTACTGAAGAATCAAAACGATTTACTGATTTTCCTAAAGAC
    TTTAAAGGTATTGCAGGTTGGATATTAGAAATAAAATCGAATACACCAGGTAACACAACA
    CAAGTATTAAGACGTAATAACTTCCCGTCTGCGCATCAATTTTTAGTTAGAAACTTTGGT
    ACTGGTGGCGTTGGTAAATGGAGTTTATTCGAGGGAAAGGTGGTTGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1911

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_RS10160 [old locus tag: NWMN_1777 ]
  • symbol: NWMN_RS10160
  • description: hypothetical protein
  • length: 636
  • theoretical pI: 6.69048
  • theoretical MW: 73630.1
  • GRAVY: -0.628302

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.135
    • Ymax_pos: 50
    • Cmax: 0.13
    • Cmax_pos: 50
    • Smax: 0.187
    • Smax_pos: 48
    • Smean: 0.082
    • D: 0.115
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446291160 NCBI
  • RefSeq: WP_000369015 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MDNKLITDLSRVFDYRYVDENEYNFKLISDMLTDFNFSLEYHRNKEVFAHNGEQIKYEHLNVTSSVSDFLTYLNGRFSNMVLGHNGDGINEVKDARVDNTGYDHKTLQDRLYHDYSTLDAFTKKVEKAVDENYKEYRATEYRFEPKEQEPEFITDLSPYTNAVMQSFWVDPRTKIIYMTQARPGNHYMLSRLKPNGQFIDRLLVKNGGHGTHNAYRYIDGELWIYSAVLDSNKNNKFVRFQYRTGEITYGNEMQDVMPNIFNDRYTSAIYNPIENLMIFRREYKASERQAKNSLNFIEVRSADDIDKGIDKVLYQMDIPMEYTSDTQPMQGITYDAGILYWYTGDSNTANPNYLQGFDIKTKELLFKRRIDIGGVNNNFKGDFQEAEGLDMYYDLETGRKALLIGVTIGPGNNRHHSIYSIGQRGVNQFLKNIAPQVSMTDSGGRVKPLPIQNPAYLSDITEVGHYYIYTQDTQNALDFPLPKAFRDAGWFLDVLPGHYNGALRQVLTRNSTGRNMLKFERVIDIFNKKNNGAWNFCPQNAGYWEHIPKSITKLSDLKIVGLDFYITTEESKRFTDFPKDFKGIAGWILEIKSNTPGNTTQVLRRNNFPSAHQFLVRNFGTGGVGKWSLFEGKVVE

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • NWMN_RS10160 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]