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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS10165 [old locus tag: NWMN_1778 ]
  • pan locus tag?: SAUPAN001716000
  • symbol: NWMN_RS10165
  • pan gene symbol?:
  • synonym:
  • product: peptidase

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS10165 [old locus tag: NWMN_1778 ]
  • symbol: NWMN_RS10165
  • product: peptidase
  • replicon: chromosome
  • strand: -
  • coordinates: 1990961..1992862
  • length: 1902
  • essential: unknown

Accession numbers[edit | edit source]

  • Location: NC_009641 (1990961..1992862) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1778

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    ATGACAATAACTATTAAACCACCTAAAGGTAATGGCGCACCTGTACCAGTAGAAACAACT
    TTAGTAAAAAAAGTTAATGCTGACGGTGTATTAACTTTTGATATTCTAGAAAATAAATAT
    ACTTATGAAGTTATTAACGCTATAGGGAAAAGATGGATTGTTAGTCATGTCGAAGGTGAA
    AACGACAAGAAAGAATATGTAATAACTGTCATTGATAGGAAATCAGAAGGCGACAGACAA
    CTGGTTGAATGTACTGCTAGAGAGATTCCTATAGACAAGTTAATGATTGATAGGATTTAT
    GTTAATGTAACAGGATCTTTTACAGTAGAAAGATATTTTAACATTGTGTTTCAAGGTACT
    GGAATGCTTTTTGAAGTCGAAGGTAAGGTTAAGTCTTCGAAGTTTGAAAATGGTGGTGAA
    GGCGACACAAGGTTAGAAATGTTTAAAAAGGGATTAGAACATTTCGGTTTAGAATATAAA
    ATAACGTATGACAAAAAGAAAGACAGATATAAGTTTGTATTGACGCCTTTTGCAAATCAA
    AAAGCGTCTTATTTTATTTCTGACGAAGTCAACGCCAACGCTATAAAACTCGAGGAAGAT
    GCAAGTGATTTCGCCACCTTCATTAGAGGATATGGTAATTATTCAGGAGAAGAAACATTC
    GAACACGCTGGGCTCGTAATGGAAGCTAGAAGCGCATTAGCTGAGATATATGGCGATATC
    CACGCAGAACCATTTAAAGATGGTAAAGTGACTGACCAAGAAACTATGGATAAAGAATTG
    CAATCGAGATTGAAAAAGTCGTTAAAACAATCTTTGTCTTTAGATTTTTTGGTCTTAAGA
    GAATCATATCCAGAAGCAGACCCACAACCCGGAGACATAGTACAAATAAAATCTACCAAA
    CTAGGTTTGAATGATTTAGTCCGTATAGTACAAGTTAAAACGATTAGGGGTATAAACAAT
    GTAATTGTTAAGCAAGATGTAACGCTTGGTGAGTTTAATCGAGAACAACGATATATGAAG
    AAAGTAAATACTGCTGCTAATTATGTTTCTGGATTAAACGATGTTAACCTTTCTAATCCT
    AGTAAAGCGGCAGAAAACTTAAAATCTAAAGTTGCATCAATAGCTAAATCAACACTCGAT
    TTGATGAGTAGAACTGATTTGATTGAAGATAAACAACAGAAGGTAAGCTCTAAAACTGTG
    ACTACATCTGACGGCACTATCGTTCATGATTTTATAGATAAATCAAACATTAAAGATGTA
    AAAACAATTGGAACGATTGGCGATTCTGTAGCTAGAGGATCACATGCGAAAGCAAATTTC
    ACTGAAATGTTAGGCAATAAATTAAAAGCCAAAACAACAAACCTTGCAAGAGGTGGCGCT
    ACAATGGCAACAGTTCCAATAGGTAAAGAAGCGGTAGAAAACAGCATTTATAGACAAGCA
    GAGCAAATAAGAGGAGACCTAATCATATTACAAGGTACAGATGATGACTGGTTACATGGT
    TATTGGGCAGGCGTACCGATAGGCACTGATAAAACGGATACTAAAACGTTTTATGGTGCC
    TTTTGTTCTGCAATTGAAGTTATTCGGAAAAATAATCCAACTTCAAAAATACTTGTAATG
    ACAGCTACTAGACAATGTCCTATGAGTGGCACAACGATACGTCGTAAAGATACTGATAAA
    AACAAATTAGGGTTAACGTTAGAGGATTATGTCAACGCTCAGATATTGGCTTGTAGTGAA
    TTGGATGTACCAGTATATGATGCCTATCATACAGATTATTTTAAGCCATATAATCCAGCG
    TTCAGAAAATCAAGTATGCCAGACGGATTGCATCCGAACGAGAGGGGTCATGAAGTTATT
    ATGTACGAACTTATTAAAAATTATTACCAGTTTTACGGATAG
    60
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    1860
    1902

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: NWMN_RS10165 [old locus tag: NWMN_1778 ]
  • symbol: NWMN_RS10165
  • description: peptidase
  • length: 633
  • theoretical pI: 7.06767
  • theoretical MW: 70973.1
  • GRAVY: -0.452133

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED:
  • PFAM:
    Phage_barrel (CL0504) Prophage_tail; Prophage endopeptidase tail (PF06605; HMM-score: 78.6)
    and 2 more
    SGNH_hydrolase (CL0264) Lipase_GDSL_2; GDSL-like Lipase/Acylhydrolase family (PF13472; HMM-score: 54.4)
    Lipase_GDSL; GDSL-like Lipase/Acylhydrolase (PF00657; HMM-score: 24)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008885
    • TAT(Tat/SPI): 0.000504
    • LIPO(Sec/SPII): 0.000846
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MTITIKPPKGNGAPVPVETTLVKKVNADGVLTFDILENKYTYEVINAIGKRWIVSHVEGENDKKEYVITVIDRKSEGDRQLVECTAREIPIDKLMIDRIYVNVTGSFTVERYFNIVFQGTGMLFEVEGKVKSSKFENGGEGDTRLEMFKKGLEHFGLEYKITYDKKKDRYKFVLTPFANQKASYFISDEVNANAIKLEEDASDFATFIRGYGNYSGEETFEHAGLVMEARSALAEIYGDIHAEPFKDGKVTDQETMDKELQSRLKKSLKQSLSLDFLVLRESYPEADPQPGDIVQIKSTKLGLNDLVRIVQVKTIRGINNVIVKQDVTLGEFNREQRYMKKVNTAANYVSGLNDVNLSNPSKAAENLKSKVASIAKSTLDLMSRTDLIEDKQQKVSSKTVTTSDGTIVHDFIDKSNIKDVKTIGTIGDSVARGSHAKANFTEMLGNKLKAKTTNLARGGATMATVPIGKEAVENSIYRQAEQIRGDLIILQGTDDDWLHGYWAGVPIGTDKTDTKTFYGAFCSAIEVIRKNNPTSKILVMTATRQCPMSGTTIRRKDTDKNKLGLTLEDYVNAQILACSELDVPVYDAYHTDYFKPYNPAFRKSSMPDGLHPNERGHEVIMYELIKNYYQFYG

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]