From AureoWiki
Jump to navigation Jump to search
PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS11015 [old locus tag: NWMN_1911 ]
  • pan locus tag?: SAUPAN001397000
  • symbol: NWMN_RS11015
  • pan gene symbol?: recT
  • synonym:
  • product: recombinase

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS11015 [old locus tag: NWMN_1911 ]
  • symbol: NWMN_RS11015
  • product: recombinase
  • replicon: chromosome
  • strand: -
  • coordinates: 2121043..2121963
  • length: 921
  • essential: unknown

Accession numbers[edit | edit source]

  • Location: NC_009641 (2121043..2121963) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1911

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGACTGAAAATAATAAATTACAAACTATTGAACAACAATTAGTACAAGAAAAGAACGTA
    TCTGACAACGTATTAAACAAAGTGAGAGTTTTAGAGTCACAAGGCAATTTGGAATTGCCA
    AATGATTATTCACCAAGTAATGCCATGAAACAAGCATGGTTACAAATCAGCCAAGATAAC
    AAATTAATGAGTTGTAACGATACAAGCAAAGCAAATGCCTTATTAGACATGGTAACGCAA
    GGTTTAAATCCAGCTAAAAATCAATGCTACTTTATTCCTTACGGCAACAAAATGCAGTTA
    CAACGTAGCTATCACGGTAATGTAATGATGTTAAAACGTGATGCAGGTGCTCAAGATGTT
    GTTGCTCAAGTGATTTATAAAGGCGATACATTCAAGCAAGAAATGGGAGAAACAGGACGT
    ATCAAAGCGATTAAACACGAACAAGACTTCTTTAACATCGACAAAGAAAACATTATCGGT
    GCGTACTGCACAATCGTATTTAATGATGGACGAGATAACTATATTGAAGTCATGACTATT
    GAACAAATTAAACAAGCATGGATGCAGTCATCAATGATTAAAGATGAAAAAGCATTACAA
    AATTCTAAAACACATAATAATTTCAAAGAAGAAATGGCTAAAAAAACAGTTATCAATAGA
    GCTGCTAAACGTTATATCAACACATCAACAGATAGCAATATTTTCAAATACGCACAAGAA
    TCCGAACAACGTCAACGCAAAGAAGTGTTGGACGCAGAAGTTGAAGAAAATGCAAATCAA
    GAACAATTGGACTTTGAACAACCAGTTCTTGAAGAAGCACAATACACAGAATTAGAAAAT
    GATAAGCCTATTGATGTATCTGACTTTGAAGAAATAAAAGAACCTGCAACAGAAAAAGAA
    AGCGAAGAAGAGCCATTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    921

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: NWMN_RS11015 [old locus tag: NWMN_1911 ]
  • symbol: NWMN_RS11015
  • description: recombinase
  • length: 306
  • theoretical pI: 4.48199
  • theoretical MW: 35336.2
  • GRAVY: -0.875817

Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair recombinase, phage RecT family (TIGR00616; HMM-score: 58.3)
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions recombinase, phage RecT family (TIGR00616; HMM-score: 58.3)
    and 1 more
    Metabolism Energy metabolism Electron transport electron transport complex, RnfABCDGE type, G subunit (TIGR01947; HMM-score: 6.1)
  • TheSEED: data available for USA300_FPR3757
  • PFAM:
    no clan defined RecT; RecT family (PF03837; HMM-score: 176.3)
    and 1 more
    Ribonuc_red_2_N; Class II vitamin B12-dependent ribonucleotide reductase (PF08471; HMM-score: 11.5)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.046046
    • TAT(Tat/SPI): 0.000691
    • LIPO(Sec/SPII): 0.001129
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MTENNKLQTIEQQLVQEKNVSDNVLNKVRVLESQGNLELPNDYSPSNAMKQAWLQISQDNKLMSCNDTSKANALLDMVTQGLNPAKNQCYFIPYGNKMQLQRSYHGNVMMLKRDAGAQDVVAQVIYKGDTFKQEMGETGRIKAIKHEQDFFNIDKENIIGAYCTIVFNDGRDNYIEVMTIEQIKQAWMQSSMIKDEKALQNSKTHNNFKEEMAKKTVINRAAKRYINTSTDSNIFKYAQESEQRQRKEVLDAEVEENANQEQLDFEQPVLEEAQYTELENDKPIDVSDFEEIKEPATEKESEEEPF

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]