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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS11710 [old locus tag: NWMN_2027 ]
  • pan locus tag?: SAUPAN005415000
  • symbol: NWMN_RS11710
  • pan gene symbol?:
  • synonym:
  • product: transcriptional regulator

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_RS11710 [old locus tag: NWMN_2027 ]
  • symbol: NWMN_RS11710
  • product: transcriptional regulator
  • replicon: chromosome
  • strand: -
  • coordinates: 2243861..2244196
  • length: 336
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_009641 (2243861..2244196) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    ATGGAAGTATGTCCGTATCTCGAAGAAACTTTTAAAATACTTGGTAGAAGTTGGAATGGA
    TTAATCATTAATTATCTCTCAAGATGTAATGACTGTTCAGCACACTTTTCCGATATGAAA
    AGAGATTTGAAAACAATAACACCACGTGCTTTAAGTCTTAAGTTGTCAGAGCTTGCACAA
    TGGGAGTTAGTTGAGAAGCAAATCATTTCTACGAGTCCAGTACAAATTATTTATGTGCTA
    ACTGAAAAAGGTAAAGCGTTAGCAGAGGCTTTACATCCAATTGAAGCATGGGCGCAATCA
    TATGTCGATTTAACAGATCAACGTACTGCTAAATAA
    60
    120
    180
    240
    300
    336

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_RS11710 [old locus tag: NWMN_2027 ]
  • symbol: NWMN_RS11710
  • description: transcriptional regulator
  • length: 111
  • theoretical pI: 6.50773
  • theoretical MW: 12685.6
  • GRAVY: -0.152252

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:
    HTH (CL0123) HxlR; HxlR-like helix-turn-helix (PF01638; HMM-score: 61.6)
    HTH_34; Winged helix DNA-binding domain (PF13601; HMM-score: 15.2)
    Replic_Relax; Replication-relaxation (PF13814; HMM-score: 13.4)
    HTH_45; Winged helix-turn-helix (PF14947; HMM-score: 12.8)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.114
    • Ymax_pos: 37
    • Cmax: 0.141
    • Cmax_pos: 35
    • Smax: 0.167
    • Smax_pos: 4
    • Smean: 0.097
    • D: 0.108
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446373583 NCBI
  • RefSeq: WP_000451438 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MEVCPYLEETFKILGRSWNGLIINYLSRCNDCSAHFSDMKRDLKTITPRALSLKLSELAQWELVEKQIISTSPVQIIYVLTEKGKALAEALHPIEAWAQSYVDLTDQRTAK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • NWMN_RS11710 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]