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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS12915 [old locus tag: NWMN_2241 ]
  • pan locus tag?: SAUPAN005834000
  • symbol: NWMN_RS12915
  • pan gene symbol?:
  • synonym:
  • product: sodium ABC transporter permease

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_RS12915 [old locus tag: NWMN_2241 ]
  • symbol: NWMN_RS12915
  • product: sodium ABC transporter permease
  • replicon: chromosome
  • strand: -
  • coordinates: 2463934..2465166
  • length: 1233
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_009641 (2463934..2465166) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGCATAAGTTTTGGGCGACATTTACTTTGACATATATCAAAAAAATTAAAGCTAAATCA
    TTTGTAATTTTTATGATTATTATTGCTGCCTTAATGATTGGCCTATCTAACATTGATAAG
    ATTATTAACATGTTTGATGATGGTCCAGATAAAATTGGTGTAGCAGCACCGAATGAACAA
    ATCTATAAGGTTTTCAAGCAACAGGCGAATACATTTCATAGTGATGCTAAGTTTACTAAA
    GTTTCTATAGAAGATGCTGAAAAAGAAGTAAAAAAACATAAACTTGATAAAGCTTATATT
    ATCAAGGTGAATCAAAATCGCACGTTACAAGGGACAATCATTAGTGAGAAGCGAGTAAGT
    CATGAAGATTCACAAAAAGTACAAGCACTGCTTACAGCTATTCAAACAAATATGGTAGCC
    GGGGAATTAAATATCAACAAAGAAGACTTACAAAAATTACAAGCACAAAGTAAAGTTGAT
    AATAAGGTGATTTCTAATGATGAAGTCGATAAAGTATCAGAAGGACAAAAGATTTTCAAC
    TATGCTTTAGCTTATGGCATTATCTTTCTAATGTTCTTCATTGTTTTAAATTATGCATCT
    CAAATAGCTATGGAAATTGCTAGTGAGAAAACATCGCGTGTCATTGAAATGATTATTACA
    AGTATTTCACCAATCCAACATATTTTTGCTAAAATTTTAGGCGTTATAGCAGTTGCCGTG
    ACTCAGATTATTTTAATTGTATTGATGGCAGTTATATGCATTTTTGCCTTTGACTTAAAA
    GACTTGCTACAAGGTTTTAACGTGGAAATGAATCAATTGTCTTGGCAAATTATTATTGTC
    GGAATTATAAGTAGTATTGTTGGAATTACGGCGTATGTATTACTTGCAGCCATCCTCGGA
    TCATTAACATCTAGAATAGAAGATTTAAATCAATCTTTGATGCCACTGACATTACTTGGT
    ATGATTGCATTTTATATCGCGATATTCACGATAAATAATCCTGATGGACAACTTGCTTTA
    ATCACAAGTTATATTCCGTTTTTAGCGCCATTTCAATTAGTTGTACGCGCTCAAACTTCA
    GGGCTTCAAATATATGAGGTCATCTTAAGTTCTTTAATCTCAATTGTAATGGTAGCTGTC
    TTGATATGGATTGCAATTAAAACATATAAAGATTCAGTACTTACATTTGAACGTGGCTTA
    TTTAATTCAATGAAACGTGTATTTAAAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1233

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_RS12915 [old locus tag: NWMN_2241 ]
  • symbol: NWMN_RS12915
  • description: sodium ABC transporter permease
  • length: 410
  • theoretical pI: 9.55044
  • theoretical MW: 45929.2
  • GRAVY: 0.48439

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismPurines, pyrimidines, nucleosides, and nucleotidesPurine ribonucleotide biosynthesisinosine-5'-monophosphate dehydrogenase (TIGR01302; EC 1.1.1.205; HMM-score: 13.4)
  • TheSEED:
  • PFAM:
    ABC-2 (CL0181) ABC2_membrane_3; ABC-2 family transporter protein (PF12698; HMM-score: 167.8)
    no clan definedATP-gua_PtransN; ATP:guanido phosphotransferase, N-terminal domain (PF02807; HMM-score: 13.9)
    DUF502; Protein of unknown function (DUF502) (PF04367; HMM-score: 12.8)
    Abhydrolase_9_N; Alpha/beta-hydrolase family N-terminus (PF15420; HMM-score: 6.4)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.182
    • Ymax_pos: 39
    • Cmax: 0.119
    • Cmax_pos: 39
    • Smax: 0.372
    • Smax_pos: 36
    • Smean: 0.267
    • D: 0.215
  • predicted transmembrane helices (TMHMM): 7

Accession numbers[edit source | edit]

  • GI: 446470853 NCBI
  • RefSeq: WP_000548707 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MHKFWATFTLTYIKKIKAKSFVIFMIIIAALMIGLSNIDKIINMFDDGPDKIGVAAPNEQIYKVFKQQANTFHSDAKFTKVSIEDAEKEVKKHKLDKAYIIKVNQNRTLQGTIISEKRVSHEDSQKVQALLTAIQTNMVAGELNINKEDLQKLQAQSKVDNKVISNDEVDKVSEGQKIFNYALAYGIIFLMFFIVLNYASQIAMEIASEKTSRVIEMIITSISPIQHIFAKILGVIAVAVTQIILIVLMAVICIFAFDLKDLLQGFNVEMNQLSWQIIIVGIISSIVGITAYVLLAAILGSLTSRIEDLNQSLMPLTLLGMIAFYIAIFTINNPDGQLALITSYIPFLAPFQLVVRAQTSGLQIYEVILSSLISIVMVAVLIWIAIKTYKDSVLTFERGLFNSMKRVFKK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • NWMN_RS12915 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]