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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0071
  • pan locus tag?: SAUPAN000458000
  • symbol: kdpC
  • pan gene symbol?: kdpC
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA0071
  • symbol: kdpC
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 80880..81251
  • length: 372
  • essential: no DEG

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    CTGATTATGTTTGTTTTATGCGGATTTATCTTCCCGCTGACTGTCACAGCGCTTGGACAA
    GTATTATTTCCAGAACAAGCAAACGGCAGTTTAGTGAAACAAGATGGCAAAGTAATTGGT
    TCAAAGCTCATTGGACAACAATGGACAGAACCTAAATATTTCCATGGACGTATCAGTGCA
    GTCAATTACAATATGAATGCGAATGAAGTGAAAGAAAGTGGCGGACCTGCTTCAGGCGGC
    TCAAACTACGGCAATTCAAATCCTGAATTGAAAAAAAGAGTTCAAGAGACTATTAAACAA
    GAAGGAAAAAAAATTTCAAGTGATGCGGTGACCGCTTCTGGCTCTGGTTTAGACCCAGAT
    ATTACGGTTTGA
    60
    120
    180
    240
    300
    360
    372

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA0071
  • symbol: KdpC
  • description: hypothetical protein
  • length: 123
  • theoretical pI: 8.46093
  • theoretical MW: 13133.8
  • GRAVY: -0.263415

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismTransport and binding proteinsCations and iron carrying compoundsK+-transporting ATPase, C subunit (TIGR00681; EC 3.6.3.12; HMM-score: 125.6)
  • TheSEED:  
    Potassium metabolismPotassium metabolism - no subcategoryPotassium homeostasis Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1) 
  • PFAM:
    no clan definedKdpC; K+-transporting ATPase, c chain (PF02669; HMM-score: 148.8)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.17
    • Cytoplasmic Membrane Score: 9.51
    • Cellwall Score: 0.16
    • Extracellular Score: 0.15
    • Internal Helix: 1
  • LocateP: Secretory(released) (with CS)
    • Prediction by SwissProt Classification: Extracellular
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: 0.5
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: VLFPEQAN
  • SignalP: Signal peptide length 18 aa
    • Ymax: 0.431
    • Ymax_pos: 18
    • Cmax: 0.256
    • Cmax_pos: 18
    • Smax: 0.811
    • Smax_pos: 17
    • Smean: 0.719
    • D: 0.543
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 15925778 NCBI
  • RefSeq: NP_373311 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MIMFVLCGFIFPLTVTALGQVLFPEQANGSLVKQDGKVIGSKLIGQQWTEPKYFHGRISAVNYNMNANEVKESGGPASGGSNYGNSNPELKKRVQETIKQEGKKISSDAVTASGSGLDPDITV

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]