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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0109 [new locus tag: SA_RS00700 ]
  • pan locus tag?: SAUPAN000911000
  • symbol: sirC
  • pan gene symbol?: sirC
  • synonym:
  • product: lipoprotein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA0109 [new locus tag: SA_RS00700 ]
  • symbol: sirC
  • product: lipoprotein
  • replicon: chromosome
  • strand: -
  • coordinates: 125543..126460
  • length: 918
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGATGATTGGTTCAAGCTTTATACCATTACAACGCGTACTGATGTACTTTATAAATCCA
    AATGACAGTATGGATCAATTCACTTTAGAAGTATTACGCTTACCTCGCATTACACTTGCG
    ATTTTAGCAGGTGCCGCACTAGGAATGAGTGGTTTAATGTTGCAAAATGTATTAAAAAAT
    CCAATTGCCTCACCTGATATTATCGGTATCACAGGTGGTGCTAGCTTAAGTGCTGTTGTC
    TTTATTGCATTTTTCAGCCATTTAACGATACATTTACTTCCACTATTTGCAGTATTAGGT
    GGCGCAGTTGCAATGATGATACTATTAGTGTTTCAAACGAAAGGACAAATACGCCCGACA
    ATACTCATAATCATCGGTATTTCGATGCAAACGTTGTTTATTGCGCTTGTCCAAGGATTA
    CTCATTACAACGAAGCAATTATCTGCTGCCAAAGCTTATACATGGCTAGTCGGAAGTCTT
    TACGGTGCTACGTTTAAAGATACAATCATTTTGGGTATGGTTATTTTAGCTGTTGTGCCG
    TTGTTATTTCTTGTTATACCAAAAATGAAAATATCTATACTTGATGACCCTGTAGCGATT
    GGCTTAGGCTTACATGTACAACGTATGAAACTAATCCAATTAATCACTTCTACTATACTC
    GTATCTATGGCAATCAGTTTAGTAGGTAACATTGGGTTTGTCGGTTTAATCGCACCACAT
    ATCGCGAAAACAATCGTTCGCGGAAGTTATGCTAAAAAGTTACTAATGTCAGCAATGATT
    GGTGCCATATCAATTGTTATTGCAGACTTAATTGGGCGTACCTTATTCTTGCCTAAAGAA
    GTGCCAGCAGGTGTATTTATTGCTGCTTTTGGTGCCCCATTCTTCATATACTTATTATTA
    ACCGTGAAAAAGTTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    918

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA0109 [new locus tag: SA_RS00700 ]
  • symbol: SirC
  • description: lipoprotein
  • length: 305
  • theoretical pI: 10.7701
  • theoretical MW: 32651.9
  • GRAVY: 1.16492

Function[edit source | edit]

  • TIGRFAM:
    proposed F420-0 ABC transporter, permease protein (TIGR03869; HMM-score: 149.5)
    and 1 more
    MetabolismTransport and binding proteinsUnknown substrateanchored repeat-type ABC transporter, permease subunit (TIGR03770; HMM-score: 28.9)
  • TheSEED:  
    Iron acquisition and metabolismSiderophoresSiderophore Staphylobactin Siderophore staphylobactin ABC transporter, permease protein SirC 
  • PFAM:
    Membrane_trans (CL0142) FecCD; FecCD transport family (PF01032; HMM-score: 273.3)
    and 1 more
    ABC-3; ABC 3 transport family (PF00950; HMM-score: 20.1)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -0.5
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.132
    • Ymax_pos: 16
    • Cmax: 0.139
    • Cmax_pos: 26
    • Smax: 0.21
    • Smax_pos: 49
    • Smean: 0.163
    • D: 0.144
  • predicted transmembrane helices (TMHMM): 8

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MMIGSSFIPLQRVLMYFINPNDSMDQFTLEVLRLPRITLAILAGAALGMSGLMLQNVLKNPIASPDIIGITGGASLSAVVFIAFFSHLTIHLLPLFAVLGGAVAMMILLVFQTKGQIRPTILIIIGISMQTLFIALVQGLLITTKQLSAAKAYTWLVGSLYGATFKDTIILGMVILAVVPLLFLVIPKMKISILDDPVAIGLGLHVQRMKLIQLITSTILVSMAISLVGNIGFVGLIAPHIAKTIVRGSYAKKLLMSAMIGAISIVIADLIGRTLFLPKEVPAGVFIAAFGAPFFIYLLLTVKKL

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator: SA1329 regulon (Fur*)
    Fur*(TF)important in Iron homeostasisRegPrecise

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]

Suzanne E Dale, M Tom Sebulsky, David E Heinrichs
Involvement of SirABC in iron-siderophore import in Staphylococcus aureus.
J. Bacteriol.: 2004, 186(24);8356-62
[PubMed:15576785] [WorldCat.org] [DOI] (P p)