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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0191 [new locus tag: SA_RS01135 ]
  • pan locus tag?: SAUPAN001044000
  • symbol: SA0191
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA0191 [new locus tag: SA_RS01135 ]
  • symbol: SA0191
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 226088..227200
  • length: 1113
  • essential: no DEG

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    TTGAGGCGTAAAAGGAAATGGCTAATTGTTATTTGTGTATTATTAGTATTGATTACGATA
    TCACAAATTTTGAAACATTTTAACTATGGAACTGAGAGTAAAGAAGCATACAATACATAT
    ACGGTTGAAAAAGAAAGACAATTAGATTTACAAGGTAAGGCATATCCACGTGAAGTTAAA
    ACATATTATAAAAATAATCAGGTTGGAACATATTTGGGTGTGCAAGTAGCGGACGGGCAA
    ACAGTCAAAAAAGGAGACATGTTAATTAATTATAAAATAAATAGTAATAAACGACAGCAA
    CTTGTTGATAAGATAAATGATACTCAACATATTATTACAGAAGTTTATTTAAACATTACT
    AAAGGTTTAAACAATCGAGAGATACAGAAGAAGTTAATTGAATATAAGCAGACATTATAT
    GAAGCTCAACAGCAATTGTATCAGTATGATAGTCAAAATAGGGATAGTATGTATGCATCA
    TTTGATGGCAAGATTATGATCAAGAATATAGATAATGACAGTGATAATCAACCTATACTG
    TATCTCATTTCAAAGGAGTCTCATATTAAAACGTCTGTTACGGAGTTTGATTTAAACAAA
    GTCAAAAAAGGAGACAAAGTTAACTTAAGTATTACGAGTACGGGTAAAACAGGAGCGGGG
    ATTATAAAACAAATCTCTGAGTTGCCTATTAGTTATGAAGAGAATTTAAGTCTTCACGAA
    AATGATGCCCTGCATTTACCAGAAAGTAACAACGATGGGGAATTAGCAAATTCAAAATCG
    ATTTCGGCATCTCCAATATTTAAGAGTAATAACAACTCTGAATTATCAAAGTATGGAGTT
    ATAATTGATGATCTTAGTCTACCAATACGTGCAGGTTATTCGTTGGAAATTAAAGTCCCA
    TTAAATGCGATTAAAATACCTAAATCAGTATTAACAAAAGGCAATAATGTTTTTATTGTT
    AATAAAAATAGTATTGTGGAAAAACGGAATATTCGTATAAAAAGAATCAATGGTGACATT
    ATTGTAGAAAAGGGGTTAAAACCTGGAGACAAGTTAATTAAACAACCTAAAAGTACAATG
    AATGATGGTGATAAGGTTGAGATTTCGTCATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1113

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA0191 [new locus tag: SA_RS01135 ]
  • symbol: SA0191
  • description: hypothetical protein
  • length: 370
  • theoretical pI: 9.80936
  • theoretical MW: 42045.8
  • GRAVY: -0.559459

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismTransport and binding proteinsUnknown substrateefflux transporter, RND family, MFP subunit (TIGR01730; HMM-score: 53.8)
    MetabolismTransport and binding proteinsOthermembrane fusion protein cluster 2 protein (TIGR00999; HMM-score: 26.9)
    Genetic information processingProtein fateProtein and peptide secretion and traffickingtype I secretion membrane fusion protein, HlyD family (TIGR01843; HMM-score: 9.8)
  • TheSEED:  
    FIG01108571: hypothetical protein 
  • PFAM:
    TPR (CL0020) Tcf25; Transcriptional repressor TCF25 (PF04910; HMM-score: 13.2)
    Hybrid (CL0105) Biotin_lipoyl_2; Biotin-lipoyl like (PF13533; HMM-score: 13)
    no clan definedMyosin-VI_CBD; Myosin VI cargo binding domain (PF16521; HMM-score: 12.2)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 4.6
    • Cellwall Score: 2.48
    • Extracellular Score: 2.92
    • Internal Helix: 1
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: 0.5
    • N-terminally Anchored Score: 4
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: Signal peptide length 26 aa
    • Ymax: 0.322
    • Ymax_pos: 26
    • Cmax: 0.148
    • Cmax_pos: 36
    • Smax: 0.851
    • Smax_pos: 22
    • Smean: 0.73
    • D: 0.481
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MRRKRKWLIVICVLLVLITISQILKHFNYGTESKEAYNTYTVEKERQLDLQGKAYPREVKTYYKNNQVGTYLGVQVADGQTVKKGDMLINYKINSNKRQQLVDKINDTQHIITEVYLNITKGLNNREIQKKLIEYKQTLYEAQQQLYQYDSQNRDSMYASFDGKIMIKNIDNDSDNQPILYLISKESHIKTSVTEFDLNKVKKGDKVNLSITSTGKTGAGIIKQISELPISYEENLSLHENDALHLPESNNDGELANSKSISASPIFKSNNNSELSKYGVIIDDLSLPIRAGYSLEIKVPLNAIKIPKSVLTKGNNVFIVNKNSIVEKRNIRIKRINGDIIVEKGLKPGDKLIKQPKSTMNDGDKVEISS

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]