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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0193 [new locus tag: SA_RS01145 ]
  • pan locus tag?: SAUPAN001048000
  • symbol: SA0193
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA0193 [new locus tag: SA_RS01145 ]
  • symbol: SA0193
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 227874..229052
  • length: 1179
  • essential: no DEG

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGAGGAAAGTTTTAAATATTTTTACAATAGCTTTTAAATCAATATTGAAAAATAAAGGT
    AGAAATATATTTACAATGATAGGTATAATCATCGGTATTTCTTCTGTTATTACGATAATG
    TCTTTGGGAAATGGCTTTAAAAAAACTGCTGCTGATCAATTTTCAGATGCTGGCGCCGGA
    AAACAAGAAGCGTTGATTAGCTTTACTTTTAAAGTTGATGAGAAAATCAAAAAGTATCCT
    TTTAATCAAAGAGATATAGAGTTGGTAAATCAAGTTGATGGCGTACTAGATGCGAAGCTA
    AAGGAAAATAAAGAAGAAGGAATTGAAGCCACAATAACTAATGTCCAGAAAAAAAGTGAC
    ATCTTCATTATAAAAAAACAAAATTTACACTCTTTTAAAGTAGGTAGAGGGTTTGATAAA
    GAGGATAATGAATTACGTAAGAAAATAGTGGTTATAAATGATCAAGTAGCAAAAACTGTA
    TTCAATAATAATGCTATTGGTAAATCGCTATATATTGAGGGACAGGGATTTGAAGTCATA
    GGAATTACGGATAAACTATATTCTGACTCATCTACCGTTATAATGCCTGAAAATACATTC
    AACTACTATATGGGACACTTACATCAAGGTCTGCCTACCTTACAGATAATTATTGAAGAT
    GGTTACAATAAAAAAACTGTAGTTAAAAAAGTAGAATCACTATTAAATAAAAAAGGATCG
    GGCTCTGTTTTAGGTGAGTATACATATACAGACACTGAAGAAATTATCAAAAGTATTGAT
    AAAATTTTTGATAGTATTACTTATTTTGTAGCAGCTGTTGCCGGTATTTCACTTTTTATT
    GCTGGTATTGGAGTTATGAATGTCATGTATATATCTGTAGCTGAAAGAACAGAAGAAATT
    GCGATACGACGTGCATTTGGTGCAAAAAGTCGAGATATTGAACTACAATTTTTAATAGAG
    AGCATTTTAATATGTGTGACAAGTGGTTTTATTGGACTTATTTTAGGTGTTGTGTTTGCA
    ACAATAATTGATGTATTAACACCAGATTATATTAAAAGTGTAGTAAGTTTGAGTTCTGTC
    ATAATTGCGGTTAGTGTGTCGATATTAATTGGACTTCTTTTTGGATGGATACCAGCTCGC
    GCAGCATCTAAGAAAGAGCTCATAGATATTATAAAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1179

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA0193 [new locus tag: SA_RS01145 ]
  • symbol: SA0193
  • description: hypothetical protein
  • length: 392
  • theoretical pI: 9.39443
  • theoretical MW: 43335.3
  • GRAVY: 0.225765

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    acidobacterial duplicated orphan permease (TIGR03434; HMM-score: 100)
    Genetic information processingProtein fateProtein and peptide secretion and traffickinglipoprotein releasing system, transmembrane protein, LolC/E family (TIGR02212; HMM-score: 40)
    Genetic information processingProtein fateProtein and peptide secretion and traffickinglipoprotein releasing system, transmembrane protein LolE (TIGR02213; HMM-score: 18.8)
    Cellular processesCellular processesCell divisionputative protein insertion permease FtsX (TIGR00439; HMM-score: 8.4)
    Genetic information processingProtein fateProtein and peptide secretion and traffickingputative protein insertion permease FtsX (TIGR00439; HMM-score: 8.4)
  • TheSEED:  
    ABC transporter, permease protein 
  • PFAM:
    no clan definedMacB_PCD; MacB-like periplasmic core domain (PF12704; HMM-score: 82.2)
    BPD_transp_1 (CL0404) FtsX; FtsX-like permease family (PF02687; HMM-score: 51.2)
    no clan definedSpecificRecomb; Site-specific recombinase (PF10136; HMM-score: 10.7)
    Tetraspannin (CL0347) DUF4064; Protein of unknown function (DUF4064) (PF13273; HMM-score: 9.9)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 9.99
    • Cellwall Score: 0.01
    • Extracellular Score: 0.01
    • Internal Helices: 4
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.253
    • Ymax_pos: 51
    • Cmax: 0.202
    • Cmax_pos: 51
    • Smax: 0.471
    • Smax_pos: 10
    • Smean: 0.269
    • D: 0.259
  • predicted transmembrane helices (TMHMM): 4

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MRKVLNIFTIAFKSILKNKGRNIFTMIGIIIGISSVITIMSLGNGFKKTAADQFSDAGAGKQEALISFTFKVDEKIKKYPFNQRDIELVNQVDGVLDAKLKENKEEGIEATITNVQKKSDIFIIKKQNLHSFKVGRGFDKEDNELRKKIVVINDQVAKTVFNNNAIGKSLYIEGQGFEVIGITDKLYSDSSTVIMPENTFNYYMGHLHQGLPTLQIIIEDGYNKKTVVKKVESLLNKKGSGSVLGEYTYTDTEEIIKSIDKIFDSITYFVAAVAGISLFIAGIGVMNVMYISVAERTEEIAIRRAFGAKSRDIELQFLIESILICVTSGFIGLILGVVFATIIDVLTPDYIKSVVSLSSVIIAVSVSILIGLLFGWIPARAASKKELIDIIK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]