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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0438 [new locus tag: SA_RS02495 ]
  • pan locus tag?: SAUPAN002200000
  • symbol: recR
  • pan gene symbol?: recR
  • synonym:
  • product: recombination protein RecR

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA0438 [new locus tag: SA_RS02495 ]
  • symbol: recR
  • product: recombination protein RecR
  • replicon: chromosome
  • strand: +
  • coordinates: 504705..505301
  • length: 597
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGCATTATCCAGAACCTATATCAAAGCTTATTGATAGCTTTATGAAATTGCCAGGCATT
    GGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTT
    GTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGT
    GGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAACAAAGAGATCGTTCA
    GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATAC
    AAAGGTTTATATCACGTTTTACATGGGTCTATTTCACCTATGGATGGCATTGGACCAGAA
    GATATTAATATTCCTTCATTGATTGAACGCTTGAAAAGCGATGAAGTTAGCGAATTAATC
    TTAGCTATGAACCCGAACTTAGAGGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
    AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTA
    GAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    597

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA0438 [new locus tag: SA_RS02495 ]
  • symbol: RecR
  • description: recombination protein RecR
  • length: 198
  • theoretical pI: 4.75667
  • theoretical MW: 22072.4
  • GRAVY: -0.177778

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Genetic information processingDNA metabolismDNA replication, recombination, and repairrecombination protein RecR (TIGR00615; HMM-score: 290.2)
    Genetic information processingDNA metabolismDNA replication, recombination, and repairHolliday junction DNA helicase RuvA (TIGR00084; EC 3.6.4.12; HMM-score: 11.4)
  • TheSEED:  
    DNA MetabolismDNA repairDNA repair, bacterial RecFOR pathway Recombination protein RecR 
    DNA replicationDNA-replication Recombination protein RecR 
    DNA uptake, competenceDNA processing cluster Recombination protein RecR 
  • PFAM:
    Toprim-like (CL0413) Toprim_4; Toprim domain (PF13662; HMM-score: 91.3)
    no clan definedRecR; RecR protein (PF02132; HMM-score: 60)
    Toprim-like (CL0413) Toprim; Toprim domain (PF01751; HMM-score: 36.6)
    HHH (CL0198) HHH; Helix-hairpin-helix motif (PF00633; HMM-score: 22.2)
    HHH_5; Helix-hairpin-helix domain (PF14520; HMM-score: 19.6)
    HHH_8; Helix-hairpin-helix domain (PF14716; HMM-score: 15.1)
    IMS_HHH; IMS family HHH motif (PF11798; HMM-score: 14.1)
    RING (CL0229) Zn_ribbon_17; Zinc-ribbon, C4HC2 type (PF17120; HMM-score: 13.2)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.151
    • Ymax_pos: 28
    • Cmax: 0.128
    • Cmax_pos: 47
    • Smax: 0.328
    • Smax_pos: 24
    • Smean: 0.164
    • D: 0.156
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRSVICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKSDEVSELILAMNPNLEGESTAMYISRLVKPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]