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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0542 [new locus tag: SA_RS03140 ]
  • pan locus tag?: SAUPAN002363000
  • symbol: SA0542
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA0542 [new locus tag: SA_RS03140 ]
  • symbol: SA0542
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 635642..636094
  • length: 453
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGTTTTGGATCTTAAACTTTATCTTTAGCTTTTTAGCTTCAATGTTCTTCTGCGTCATT
    TTTGATGCACCTAGAAAATTATATCTATCATGTGGTTTCGTTGGTACATGTGGATGGATG
    GTTTACACCTTATTCTTCAACGGCTTTAATGTGCACACTATATACTCTAGTTTCTTTGGT
    AGTTTAGCATTAGGCTTGTTAAGTCATTATATGGCTCGTAAACAAAAAGAACCTGCCATC
    ATTTTTATGGTAACGGGTATCATTCCATTAGTACCAGGTGGATTAGCATACGATGCTACA
    AAAAATTTAGTCTTATTAAATTTCAGCACAGCAATCAATACCATGTTAGAAGTAACACTT
    ATTGCAGGCGCCATCGCATTAGGTTTATTATTCGCCGACCAAATTTCCAAATTAATTGTT
    TCTGGGTTCGTGAAATCTTTTAAACGATTATAA
    60
    120
    180
    240
    300
    360
    420
    453

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA0542 [new locus tag: SA_RS03140 ]
  • symbol: SA0542
  • description: hypothetical protein
  • length: 150
  • theoretical pI: 9.5134
  • theoretical MW: 16667.9
  • GRAVY: 0.964

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    Integral membrane protein 
  • PFAM:
    UMP_1 (CL0470) ThrE_2; Threonine/Serine exporter, ThrE (PF12821; HMM-score: 134)
    ThrE; Putative threonine/serine exporter (PF06738; HMM-score: 34.1)
    no clan definedFlp_Fap; Flp/Fap pilin component (PF04964; HMM-score: 16.4)
    GPCR_A (CL0192) 7TMR-DISM_7TM; 7TM diverse intracellular signalling (PF07695; HMM-score: 12.8)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -0.5
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.172
    • Ymax_pos: 23
    • Cmax: 0.168
    • Cmax_pos: 23
    • Smax: 0.387
    • Smax_pos: 7
    • Smean: 0.229
    • D: 0.194
  • predicted transmembrane helices (TMHMM): 4

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MFWILNFIFSFLASMFFCVIFDAPRKLYLSCGFVGTCGWMVYTLFFNGFNVHTIYSSFFGSLALGLLSHYMARKQKEPAIIFMVTGIIPLVPGGLAYDATKNLVLLNFSTAINTMLEVTLIAGAIALGLLFADQISKLIVSGFVKSFKRL

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]