From AureoWiki
Jump to: navigation, search
NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0596 [new locus tag: SA_RS03425 ]
  • pan locus tag?: SAUPAN002517000
  • symbol: tagX
  • pan gene symbol?: tagX
  • synonym:
  • product: teichoic acid biosynthesis protein X

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA0596 [new locus tag: SA_RS03425 ]
  • symbol: tagX
  • product: teichoic acid biosynthesis protein X
  • replicon: chromosome
  • strand: +
  • coordinates: 689103..690110
  • length: 1008
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    TTGTTAATATCTATTGAGAGTAAAGAACACTATAGAATCCTTTGTATTGATGGTGGTTCT
    ACTGATCAAACAATTCCTATGATTGAACGGTTACAAAGAGAACTCAAGCATATTTCATTA
    ATACAATTACAAAATGCTTCGATAGCTACGTGTATTAATAAAGGTTTGATGGATATCAAA
    ATGACAGATCCACATGATAGTGACGCATTTATGGTCATAAATCCAACATCAATCGTATTG
    CCAGGTAAATTAGATAGGTTAACTGCAGCTTTCAAAAATAATGATAATATTGATATGGTA
    ATAGGGCAGCGAGCTTACAATTACCATGGTGAATGGAAATTGAAAAGTGCTGATGAGTTT
    ATTAAAGATAATCGAATCGTTACATTAACGGAACAACCAGATTTGTTATCAATGATGTCT
    TTTGACGGAAAGTTATTCAGTGCTAAATTTGCTGAATTACAGTGTGACGAAACTTTAGCT
    AACACATACAATCACGCAATACTTGTCAAGGCGATGCAAAAAGCTACGGATATACATTTA
    GTTTCACAGATGATTGTCGGAGATAACGATATAGATACACATGCTACAAGTAACGATGAA
    GATTTTAATAGATATATCATAGAAATTATGAAAATAAGACAACGAGTCATGGAAATGTTA
    CTATTACCTGAACAAAGGCTATTATATAGTGATATGGTTGATCGTATTTTATTCAATAAT
    TCATTAAAATATTATATGAATGAACACCCAGCAGTAACGCACACGACAATTCAACTCGTA
    AAAGACTATATTATGTCTATGCAGCATTCTGATTATGTATCGCAAAACATGTTTGACATT
    ATAAATACAGTTGAATTTATTGGTGAGAATTGGGATAGAGAAATATACGAATTGTGGCGA
    CAAACATTAATTCAAGTGGGCATTAATAGGCCGACTTATAAAAAATTCTTGATACAACTT
    AAAGGGAGAAAGTTTGCACATCGAACAAAATCAATGTTAAAACGATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1008

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA0596 [new locus tag: SA_RS03425 ]
  • symbol: TagX
  • description: teichoic acid biosynthesis protein X
  • length: 335
  • theoretical pI: 6.58891
  • theoretical MW: 39050.9
  • GRAVY: -0.303881

Function[edit source | edit]

  • reaction:
    EC 2.4.-.-?  ExPASy
  • TIGRFAM:
    poly-beta-1,6 N-acetyl-D-glucosamine synthase (TIGR03937; EC 2.4.1.-; HMM-score: 19.6)
  • TheSEED:  
    Cell Wall and CapsuleGram-Positive cell wall componentsTeichoic and lipoteichoic acids biosynthesis Teichoic acid biosynthesis protein X 
  • PFAM:
    GT-A (CL0110) Glycos_transf_2; Glycosyl transferase family 2 (PF00535; HMM-score: 25.6)
    no clan definedThg1; tRNAHis guanylyltransferase (PF04446; HMM-score: 15.4)
    GT-A (CL0110) Glyco_tranf_2_3; Glycosyltransferase like family 2 (PF13641; HMM-score: 12.2)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.115
    • Ymax_pos: 70
    • Cmax: 0.132
    • Cmax_pos: 70
    • Smax: 0.143
    • Smax_pos: 3
    • Smean: 0.088
    • D: 0.105
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MLISIESKEHYRILCIDGGSTDQTIPMIERLQRELKHISLIQLQNASIATCINKGLMDIKMTDPHDSDAFMVINPTSIVLPGKLDRLTAAFKNNDNIDMVIGQRAYNYHGEWKLKSADEFIKDNRIVTLTEQPDLLSMMSFDGKLFSAKFAELQCDETLANTYNHAILVKAMQKATDIHLVSQMIVGDNDIDTHATSNDEDFNRYIIEIMKIRQRVMEMLLLPEQRLLYSDMVDRILFNNSLKYYMNEHPAVTHTTIQLVKDYIMSMQHSDYVSQNMFDIINTVEFIGENWDREIYELWRQTLIQVGINRPTYKKFLIQLKGRKFAHRTKSMLKR

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]