NCBI: 26-AUG-2013
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus N315
- locus tag: SA0625
- pan locus tag?: SAUPAN002551000
- symbol: SA0625
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SA0625
- symbol: SA0625
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 722032..722220
- length: 189
- essential: no DEG
⊟Accession numbers[edit source | edit]
- Gene ID: 1123432 NCBI
- RefSeq: NP_373880 NCBI
- MicrobesOnline: 102906 MicrobesOnline
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
- 1
61
121
181TTGCAATATGTAGTGCCTAAAGGAACAATTTTTGCTTCTTCAATCGAAATTTCAAATACT
TATAGTTTAGTAGGTTGTATGTGTCAACCGGCATTTGAGTTTAAGCAGTTTGAATTGTTT
AAGCAATCTGAATTAATTACACAATATCCGCATCTTAAATCAGTGATTGAAAAATATGCT
TTAAAATAA60
120
180
189
⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SA0625
- symbol: SA0625
- description: hypothetical protein
- length: 62
- theoretical pI: 8.20161
- theoretical MW: 7154.34
- GRAVY: 0.0596774
⊟Function[edit source | edit]
- reaction:
- TIGRFAM:
- TheSEED:
- PFAM: Cupin (CL0029) Cupin_5; Cupin superfamily (DUF985) (PF06172; HMM-score: 33.1)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular Possibility: 1
- Signal Peptide Possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- Ymax: 0.144
- Ymax_pos: 31
- Cmax: 0.131
- Cmax_pos: 31
- Smax: 0.213
- Smax_pos: 1
- Smean: 0.156
- D: 0.149
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MQYVVPKGTIFASSIEISNTYSLVGCMCQPAFEFKQFELFKQSELITQYPHLKSVIEKYALK
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- MicrobesOnline: SA0625 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]