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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0890 [new locus tag: SA_RS05050 ]
  • pan locus tag?: SAUPAN003236000
  • symbol: SA0890
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA0890 [new locus tag: SA_RS05050 ]
  • symbol: SA0890
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1011007..1011363
  • length: 357
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    ATGAAATTAGGTATGCTTTTAATTAGATGGATGTTAGCAACATCATTCTTAGTGCATGGT
    ACTTTGAAATTTGTTGATTTAGATGGAACAATTCACTTCTTAGGCTCTTTAGGTTTACCA
    CCTACCATCGCAGTATTGATGTCAATTGGTGAAGTTGTTGGAGGTTTAGCACTTATTATC
    GGCTTTTTAACGCCTTATGTTAATGTTTTTTATATTTGTGTTATGTTAGGCTCAATCTTC
    ACACTTAAACTTACAAGAGGATATGTAAGTGGTTATGAATTTGAAATCATACATATCGTA
    ATGAACTTAGCTTGTATTAGTAGTTACAGCTGGAAGAAATGGCTACAATTTTATTAA
    60
    120
    180
    240
    300
    357

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA0890 [new locus tag: SA_RS05050 ]
  • symbol: SA0890
  • description: hypothetical protein
  • length: 118
  • theoretical pI: 8.68513
  • theoretical MW: 13228.9
  • GRAVY: 0.988983

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    FIG01107947: hypothetical protein 
  • PFAM:
    DoxD-like (CL0131) DoxX; DoxX (PF07681; HMM-score: 57.4)
    DoxX_2; DoxX-like family (PF13564; HMM-score: 29.7)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.216
    • Ymax_pos: 13
    • Cmax: 0.158
    • Cmax_pos: 28
    • Smax: 0.521
    • Smax_pos: 4
    • Smean: 0.45
    • D: 0.307
  • predicted transmembrane helices (TMHMM): 2

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MKLGMLLIRWMLATSFLVHGTLKFVDLDGTIHFLGSLGLPPTIAVLMSIGEVVGGLALIIGFLTPYVNVFYICVMLGSIFTLKLTRGYVSGYEFEIIHIVMNLACISSYSWKKWLQFY

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]