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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0899 [new locus tag: SA_RS05100 ]
  • pan locus tag?: SAUPAN003249000
  • symbol: sspC
  • pan gene symbol?: sspC
  • synonym:
  • product: cysteine protease

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA0899 [new locus tag: SA_RS05100 ]
  • symbol: sspC
  • product: cysteine protease
  • replicon: chromosome
  • strand: -
  • coordinates: 1020017..1020346
  • length: 330
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    ATGTATCAACTACAATTTATAAATTTAGTTTACGACACAACCAAACTCACACATCTAGAA
    CAAACCAATATCAATTTATTCATTGGTAATTGGAGTAATCATCAATTACAAAAATCAATT
    TGTATACGTCATGGCGATGATACAAGTCACAATCAATATCATATTCTTTTTATAGATACG
    GCACATCAACGCATTAAATTTTCATCTATTGATAATGAAGAAATCACTTATATTCTTGAT
    TATGATGATACACAGCATATCCTCATGCAAACGTCATCCAAACAAGGTATTGGCACTTCG
    CGCCCAATCGTTTATGAGCGCTTAGTATAA
    60
    120
    180
    240
    300
    330

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA0899 [new locus tag: SA_RS05100 ]
  • symbol: SspC
  • description: cysteine protease
  • length: 109
  • theoretical pI: 6.38356
  • theoretical MW: 12869.4
  • GRAVY: -0.457798

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    Staphostatin B 
  • PFAM:
    bBprotInhib (CL0354) Staphostatin_B; Staphostatin B (PF09023; HMM-score: 244.7)
    Staphostatin_A; Staphostatin A (PF09022; HMM-score: 25)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.67
    • Cytoplasmic Membrane Score: 0.01
    • Cellwall Score: 0.15
    • Extracellular Score: 0.17
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.122
    • Ymax_pos: 19
    • Cmax: 0.11
    • Cmax_pos: 27
    • Smax: 0.192
    • Smax_pos: 9
    • Smean: 0.146
    • D: 0.131
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MYQLQFINLVYDTTKLTHLEQTNINLFIGNWSNHQLQKSICIRHGDDTSHNQYHILFIDTAHQRIKFSSIDNEEITYILDYDDTQHILMQTSSKQGIGTSRPIVYERLV

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]