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NCBI: 26-AUG-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1207 [new locus tag: SA_RS06860 ]
  • pan locus tag?: SAUPAN003770000
  • symbol: femB
  • pan gene symbol?: femB
  • synonym:
  • product: FemB protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA1207 [new locus tag: SA_RS06860 ]
  • symbol: femB
  • product: FemB protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1380485..1381744
  • length: 1260
  • essential: no DEG other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGAAATTTACAGAGTTAACTGTTACCGAATTTGACAACTTTGTACAAAATCCATCATTG
    GAAAGTCATTATTTCCAAGTAAAAGAAAATATAGTTACCCGTGAGAATGATGGCTTTGAA
    GTAGTTTTATTAGGTATTAAAGACGACAATAACAAAGTAATTGCAGCAAGCCTTTTCTCT
    AAAATTCCTACTATGGGAAGTTATGTTTACTATTCGAATCGTGGTCCAGTAATGGATTTT
    TCAGATTTAGGATTAGTTGATTATTATTTAAAAGAGTTAGATAAATATTTACAGCAACAT
    CAATGTTTATATGTTAAATTAGATCCGTATTGGTTATATCATCTATATGATAAAGATATC
    GTGCCATTTGAAGGTCGCGAGAAAAATGATGCCTTAGTAAACTTGTTTAAATCACATGGT
    TACGAGCATCATGGCTTTACAACTGAGTATGATACATCGAGCCAAGTACGATGGATGGGC
    GTATTAAACCTTGAAGGTAAAACACCCGAAACATTGAAAAAGACATTTGATAGTCAACGT
    AAACGTAATATTAATAAAGCGATAAACTATGGTGTTAAAGTCAGATTCCTTGAACGTGAT
    GAGTTCAATCTTTTCTTAGATTTATATCGTGAAACTGAAGAGCGTGCTGGATTTGTGTCA
    AAAACAGATGATTATTTTTATAACTTTATTGACACATATGGAGATAAAGTATTAGTACCA
    TTAGCATATATTGACCTTGATGAATATGTGTTAAAGTTGCAACAGGAATTGAATGACAAA
    GAAAATCGTCGTGATCAAATGATGGCGAAAGAAAACAAATCAGATAAACAAATGAAGAAA
    ATTGCAGAATTAGATAAGCAAATTGATCATGATCAGCATGAATTATTGAATGCAAGTGAA
    TTGAGCAAAACGGACGGCCCAATTCTAAACCTTGCTTCTGGCGTTTATTTTGCAAATGCA
    TATGAAGTGAATTATTTCTCTGGTGGTTCATCAGAAAAATATAATCAATTTATGGGACCA
    TACATGATGCATTGGTTTATGATTAACTATTGCTTCGATAATGGCTATGATCGTTATAAT
    TTCTATGGTTTATCAGGTGATTTTACGGAAAACAGTGAAGATTATGGCGTATACCGCTTT
    AAACGTGGATTTAATGTACAAATCGAAGAATTAATAGGGGATTTCTATAAACCAATTCAT
    AAAGTGAAATATTGGTTGTTCACAACATTGGATAAATTACGTAAAAAATTAAAGAAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA1207 [new locus tag: SA_RS06860 ]
  • symbol: FemB
  • description: FemB protein
  • length: 419
  • theoretical pI: 5.37676
  • theoretical MW: 49675.6
  • GRAVY: -0.649881

Function[edit | edit source]

  • reaction:
    EC 2.3.2.18?  ExPASy
    N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-(N6-triglycine)-D-alanyl-D-alanine-diphosphoundecaprenyl-N-acetylglucosamine:glycine glycyltransferase MurNAc-L-Ala-D-isoglutaminyl-L-Lys-(N6-tri-Gly)-D-Ala-D-Ala-diphospho-ditrans,octacis-undecaprenyl-GlcNAc + 2 glycyl-tRNA = MurNAc-L-Ala-D-isoglutaminyl-L-Lys-(N6-penta-Gly)-D-Ala-D-Ala-diphospho-ditrans,octacis-undecaprenyl-GlcNAc + 2 tRNA
  • TIGRFAM:
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage major capsid protein, HK97 family (TIGR01554; HMM-score: 12.1)
  • TheSEED  :
    • FemB, factor involved in methicillin resistance
    • tRNA-dependent lipid II-GlyGlyGly glycyltransferase (EC 2.3.2.18)
    • tRNA-dependent lipid II-GlyGlyGlyGly glycyltransferase (EC 2.3.2.18)
    Cell Wall and Capsule Cell Wall and Capsule - no subcategory tRNA-dependent amino acid transfers  tRNA-dependent lipid II-GlyGlyGly--glycine ligase
    and 1 more
    Cell Wall and Capsule Cell Wall and Capsule - no subcategory tRNA-dependent amino acid transfers  tRNA-dependent lipid II-GlyGlyGlyGly--glycine ligase
  • PFAM:
    Acetyltrans (CL0257) FemAB; FemAB family (PF02388; HMM-score: 471.9)
    and 2 more
    Acetyltransf_6; Acetyltransferase (GNAT) domain (PF13480; HMM-score: 18.7)
    no clan defined DUF1497; Protein of unknown function (DUF1497) (PF07384; HMM-score: 14.3)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.67
    • Cytoplasmic Membrane Score: 0.01
    • Cellwall Score: 0.15
    • Extracellular Score: 0.17
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004602
    • TAT(Tat/SPI): 0.000131
    • LIPO(Sec/SPII): 0.000248
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MKFTELTVTEFDNFVQNPSLESHYFQVKENIVTRENDGFEVVLLGIKDDNNKVIAASLFSKIPTMGSYVYYSNRGPVMDFSDLGLVDYYLKELDKYLQQHQCLYVKLDPYWLYHLYDKDIVPFEGREKNDALVNLFKSHGYEHHGFTTEYDTSSQVRWMGVLNLEGKTPETLKKTFDSQRKRNINKAINYGVKVRFLERDEFNLFLDLYRETEERAGFVSKTDDYFYNFIDTYGDKVLVPLAYIDLDEYVLKLQQELNDKENRRDQMMAKENKSDKQMKKIAELDKQIDHDQHELLNASELSKTDGPILNLASGVYFANAYEVNYFSGGSSEKYNQFMGPYMMHWFMINYCFDNGYDRYNFYGLSGDFTENSEDYGVYRFKRGFNVQIEELIGDFYKPIHKVKYWLFTTLDKLRKKLKK

Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

Expression & Regulation[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]