From AureoWiki
Jump to: navigation, search
NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1235 [new locus tag: SA_RS07015 ]
  • pan locus tag?: SAUPAN003819000
  • symbol: SA1235
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA1235 [new locus tag: SA_RS07015 ]
  • symbol: SA1235
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1409203..1409511
  • length: 309
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    ATGTGGACAGTTACCAAAATTAGAGCCGATTATGAGGGATGGTGGTTATTCAGTGACTGG
    CCAGAAAACATTGTTGAAAAATATCAATATCAAGATTTTGATGACATGTTTAAGCACTAT
    CAACAATTGATTAATCAATGTAAAGTTCAGTTCGATAATTATGTCACAGGCAAATATAAT
    ATTTATGCATTTTATAATAATTGTGACATGAACTATTGCGAAGATTGTGAAGAGGATTTA
    CAAATATTTTATAGTTTCATTGTTTTACAAAATAATGAAGTATATTATAAACTACCAATA
    ATTGATTAA
    60
    120
    180
    240
    300
    309

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA1235 [new locus tag: SA_RS07015 ]
  • symbol: SA1235
  • description: hypothetical protein
  • length: 102
  • theoretical pI: 3.96148
  • theoretical MW: 12720.2
  • GRAVY: -0.567647

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    FIG01108332: hypothetical protein 
  • PFAM:
    no clan definedDUF1033; Protein of unknown function (DUF1033) (PF06279; HMM-score: 64.6)
    DUF3895; Protein of unknown function (DUF3895) (PF13034; HMM-score: 14.4)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.098
    • Ymax_pos: 58
    • Cmax: 0.113
    • Cmax_pos: 28
    • Smax: 0.12
    • Smax_pos: 51
    • Smean: 0.065
    • D: 0.085
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MWTVTKIRADYEGWWLFSDWPENIVEKYQYQDFDDMFKHYQQLINQCKVQFDNYVTGKYNIYAFYNNCDMNYCEDCEEDLQIFYSFIVLQNNEVYYKLPIID

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]