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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1642 [new locus tag: SA_RS09240 ]
  • pan locus tag?: SAUPAN004608000
  • symbol: seg
  • pan gene symbol?: seg
  • synonym:
  • product: extracellular enterotoxin type G

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA1642 [new locus tag: SA_RS09240 ]
  • symbol: seg
  • product: extracellular enterotoxin type G
  • replicon: chromosome
  • strand: -
  • coordinates: 1876310..1877086
  • length: 777
  • essential: no DEG

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGAAGAAATTATCTACTGTAATTATTATTTTGATTCTAGAAATAGTTTTTCATAATATG
    AATTATGTGAATGCTCAACCCGATCCTAAATTAGACGAACTAAATAAAGTAAGTGATTAT
    AAAAATAATAAGGGAACTATGGGTAATGTAATGAATCTTTATACGTCTCCACCTGTTGAA
    GGAAGAGGAGTTATTAATTCTAGACAGTTTTTATCTCATGATTTAATTTTTCCAATTGAG
    TATAAGAGTTATAATGAGGTTAAAACTGAATTAGAAAATACAGAATTAGCTAACAATTAT
    AAAGATAAAAAAGTAGACATTTTTGGCGTTCCATATTTTTATACATGTATAATACCTAAA
    TCTGAACCGGATATAAACCAAAATTTTGGAGGTTGTTGTATGTATGGTGGTCTTACATTT
    AATAGTTCAGAAAATGAAAGAGATAAATTAATTACTGTACAGGTAACAATCGACAATAGA
    CAATCACTTGGATTTACAATAACTACAAATAAGAATATGGTTACTATTCAGGAACTAGAT
    TACAAAGCAAGACACTGGCTCACTAAAGAAAAAAAGCTATACGAGTTTGATGGTTCTGCA
    TTTGAATCTGGATATATAAAATTTACTGAAAAGAACAATACAAGTTTTTGGTTTGACTTA
    TTTCCTAAAAAAGAACTAGTACCTTTTGTTCCATATAAGTTTTTAAATATTTACGGAGAT
    AATAAAGTTGTTGATTCTAAGAGTATTAAAATGGAAGTATTTCTTAATACTCACTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    777

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA1642 [new locus tag: SA_RS09240 ]
  • symbol: Seg
  • description: extracellular enterotoxin type G
  • length: 258
  • theoretical pI: 6.93511
  • theoretical MW: 29940
  • GRAVY: -0.431008

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Phage exotoxin
    • Superantigen enterotoxin SEG
  • PFAM:
    Ant-toxin_C (CL0386) Stap_Strp_tox_C; Staphylococcal/Streptococcal toxin, beta-grasp domain (PF02876; HMM-score: 80.6)
    and 1 more
    OB_enterotoxin (CL0658) Stap_Strp_toxin; Staphylococcal/Streptococcal toxin, OB-fold domain (PF01123; HMM-score: 46.5)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0
    • Extracellular Score: 10
    • Internal Helices: 0
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 0.5
    • N-terminally Anchored Score: 5
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: Signal peptide SP(Sec/SPI) length 25 aa
    • SP(Sec/SPI): 0.97036
    • TAT(Tat/SPI): 0.00034
    • LIPO(Sec/SPII): 0.001058
    • Cleavage Site: CS pos: 25-26. VNA-QP. Pr: 0.9417
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MKKLSTVIIILILEIVFHNMNYVNAQPDPKLDELNKVSDYKNNKGTMGNVMNLYTSPPVEGRGVINSRQFLSHDLIFPIEYKSYNEVKTELENTELANNYKDKKVDIFGVPYFYTCIIPKSEPDINQNFGGCCMYGGLTFNSSENERDKLITVQVTIDNRQSLGFTITTNKNMVTIQELDYKARHWLTKEKKLYEFDGSAFESGYIKFTEKNNTSFWFDLFPKKELVPFVPYKFLNIYGDNKVVDSKSIKMEVFLNTH

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]