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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1645 [new locus tag: SA_RS09255 ]
  • pan locus tag?: SAUPAN004614000
  • symbol: yent1
  • pan gene symbol?: yent1
  • synonym:
  • product: enterotoxin Yent1

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA1645 [new locus tag: SA_RS09255 ]
  • symbol: yent1
  • product: enterotoxin Yent1
  • replicon: chromosome
  • strand: -
  • coordinates: 1878533..1878934
  • length: 402
  • essential: no DEG

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGAAGTTATTTGCCTTTATCTTCATATGTGTTAAGTCTTGCAGCTTACTATTTATGTTA
    AATGGCAATCCTAAACCAGAACAATTGAATAAAGCGAGTGAATTCACTGGTCTAATGGAT
    AATATGAGGTATTTGTATGATGATAAACACGTATCAGAAACAAACATTAAATCCCAAGAA
    AAGTTTTTACAACATGATTTATTATTTAAAATAAATGGTTCTAAAATTTTAAAAACAGAA
    TTTAATAATAAAAGCCTTTCGGATAAATATAAAAATAAAAACGTAGATTTGTTTGGGACA
    AACTATTATAATCAATGCTATTTTTCATTGGATAATATGGAATTAAATGATGGTAGATTA
    ATTGAAAAAAACGTGTATGTATGGCGGTGTGACCGAGCATGA
    60
    120
    180
    240
    300
    360
    402

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA1645 [new locus tag: SA_RS09255 ]
  • symbol: Yent1
  • description: enterotoxin Yent1
  • length: 133
  • theoretical pI: 8.59378
  • theoretical MW: 15738
  • GRAVY: -0.518045

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Enterotoxin, phage associated
  • PFAM:
    OB_enterotoxin (CL0658) Stap_Strp_toxin; Staphylococcal/Streptococcal toxin, OB-fold domain (PF01123; HMM-score: 45.1)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0.01
    • Cytoplasmic Membrane Score: 0.09
    • Cellwall Score: 0.18
    • Extracellular Score: 9.72
    • Internal Helix: 1
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.5
    • Signal peptide possibility: 0
    • N-terminally Anchored Score: 2
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: Signal peptide LIPO(Sec/SPII) length 13 aa
    • SP(Sec/SPI): 0.348695
    • TAT(Tat/SPI): 0.001295
    • LIPO(Sec/SPII): 0.496178
    • Cleavage Site: CS pos: 13-14. VKS-CS. Pr: 0.3004
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MKLFAFIFICVKSCSLLFMLNGNPKPEQLNKASEFTGLMDNMRYLYDDKHVSETNIKSQEKFLQHDLLFKINGSKILKTEFNNKSLSDKYKNKNVDLFGTNYYNQCYFSLDNMELNDGRLIEKNVYVWRCDRA

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]