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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1672 [new locus tag: SA_RS09450 ]
  • pan locus tag?: SAUPAN004791000
  • symbol: SA1672
  • pan gene symbol?: cspR
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA1672 [new locus tag: SA_RS09450 ]
  • symbol: SA1672
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1908978..1909448
  • length: 471
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGACAAATCATATCGTTTTATATCAACCAGAAATCCCAGCTAATACTGGTAACATTGCA
    CGTACGTGTGCAGGTACAAACACACATTTACATTTAATTAAACCTCTTGGATTTAGAACT
    GATGATAAAATGTTAAAAAGAGCCGGTTTAGATTATTGGGAATTTGTGAATATTACGTAT
    CATGATAGTATTGAAGCATTTTTTGAAGCCACAAATGGCGAGTATTACTTATTAACAAAA
    TTTGGTAAAAAGACTTATAGTGATTTTGATTTTTCAAATCATGACAAAGATTTTTACTTC
    ATTTTTGGAAAAGAGACGACAGGATTACCAGACTGGGTGAAAGAGAAATATCAAGACACA
    GCGTTAAGAATTCCTATGAGTGAACATATTCGTTCATTAAATTTATCAAATACTGCTGCG
    TTGTTAATTTATGAAGCGTTACGTCAACAAGATTTTCCAGGATTGAATTAA
    60
    120
    180
    240
    300
    360
    420
    471

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA1672 [new locus tag: SA_RS09450 ]
  • symbol: SA1672
  • description: hypothetical protein
  • length: 156
  • theoretical pI: 6.23354
  • theoretical MW: 18082.3
  • GRAVY: -0.449359

Function[edit source | edit]

  • reaction:
    EC 2.1.1.207?  ExPASy
    tRNA (cytidine34-2'-O)-methyltransferaseS-adenosyl-L-methionine + cytidine34 in tRNA = S-adenosyl-L-homocysteine + 2'-O-methylcytidine34 in tRNAS-adenosyl-L-methionine + 5-carboxymethylaminomethyluridine34 in tRNA(Leu) = S-adenosyl-L-homocysteine + 5-carboxymethylaminomethyl-2'-O-methyluridine34 in tRNA(Leu)
  • TIGRFAM:
    Genetic information processingProtein synthesistRNA and rRNA base modificationtRNA (cytidine(34)-2'-O)-methyltransferase (TIGR00185; EC 2.1.1.207; HMM-score: 213.8)
    Genetic information processingProtein synthesistRNA and rRNA base modificationRNA methyltransferase, TrmH family, group 3 (TIGR00186; HMM-score: 42.1)
    Genetic information processingProtein synthesistRNA and rRNA base modificationRNA methyltransferase, TrmH family, group 1 (TIGR00050; EC 2.1.1.-; HMM-score: 28.2)
  • TheSEED:  
    Glutaredoxins tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) 
  • PFAM:
    SPOUT (CL0098) SpoU_methylase; SpoU rRNA Methylase family (PF00588; HMM-score: 113)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.144
    • Ymax_pos: 21
    • Cmax: 0.11
    • Cmax_pos: 21
    • Smax: 0.254
    • Smax_pos: 13
    • Smean: 0.163
    • D: 0.152
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDSIEAFFEATNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDTALRIPMSEHIRSLNLSNTAALLIYEALRQQDFPGLN

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]