NCBI: 26-AUG-2013
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus N315
- locus tag: SA1768 [new locus tag: SA_RS10170 ]
- pan locus tag?: SAUPAN005055000
- symbol: SA1768
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SA1768 [new locus tag: SA_RS10170 ]
- symbol: SA1768
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 2024201..2024845
- length: 645
- essential: no DEG
⊟Accession numbers[edit source | edit]
- Gene ID: 1124657 NCBI
- RefSeq: NP_375066 NCBI
- BioCyc:
- MicrobesOnline: 104092 MicrobesOnline
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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601ATGGCAGTAAAACATGCAAGTGCGCCAAAGGCGTATATTAACATTACTGGTTTAGGTTTC
GCTAAATTAACGAAAGAAGGCGCGGAATTAAAATATAGTGATATTACAAAAACAAGAGGA
TTACAAAAAATTGGTGTTGAAACTGGTGGAGAACTAAAAACAGCTTATGCTGATGGCGGT
CCAATTGAATCAGGGAATACAGACGGAGAAGGTAAAATCTCATTACAAATGCATGCGTTC
CCTAAAGAGATTCGCAAAATTGTTTTTAATGAAGATTATGATGAAGATGGCGTTTACGAA
GAGAAACAAGGTAAACAAAACAATTACGTAGCTGTATGGTTCAGACAAGAGCGTAGAGAC
GGTACATTTAGAACAGTTTTATTACCTAAAGTTATGTTTACAAATCCTAAAATCGATGGA
GAAACGGCTGAGAAAGATTGGGATTTCTCAAGTGAAGAGGTTGAAGGTGAGGCACTTTTC
CCTTTAGTTGATAATAAAAAGTCAGTACGTAAGTATATCTTTGATTCAGCTAACATGACA
AATCATGATGGAGACGGTGAAAAAGGCGAAGAGGCTTTCTTAAAGAAAATTTTAGGCGAA
GAATATACTGGAAACGTGACAGAGGGTAACGAAGAAACTTTGTAA60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SA1768 [new locus tag: SA_RS10170 ]
- symbol: SA1768
- description: hypothetical protein
- length: 214
- theoretical pI: 4.64117
- theoretical MW: 23889.4
- GRAVY: -0.750935
⊟Function[edit source | edit]
- TIGRFAM: Mobile and extrachromosomal element functionsProphage functionsphage major tail protein, phi13 family (TIGR01603; HMM-score: 225)
- TheSEED: Phage A118 gp13 protein homolog
- PFAM:
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular Possibility: 1
- Signal Peptide Possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- Ymax: 0.172
- Ymax_pos: 29
- Cmax: 0.151
- Cmax_pos: 29
- Smax: 0.294
- Smax_pos: 19
- Smean: 0.206
- D: 0.186
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MAVKHASAPKAYINITGLGFAKLTKEGAELKYSDITKTRGLQKIGVETGGELKTAYADGGPIESGNTDGEGKISLQMHAFPKEIRKIVFNEDYDEDGVYEEKQGKQNNYVAVWFRQERRDGTFRTVLLPKVMFTNPKIDGETAEKDWDFSSEEVEGEALFPLVDNKKSVRKYIFDSANMTNHDGDGEKGEEAFLKKILGEEYTGNVTEGNEETL
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- MicrobesOnline: SA1768 < SA1769 < SA1770 < SA1771 < SA1772 < SA1773 < SA1774 < SA1775 < SA1776 < SA1777 < SA1778
⊟Regulation[edit source | edit]
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]