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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1828 [new locus tag: SA_RS10490 ]
  • pan locus tag?: SAUPAN005228000
  • symbol: SA1828
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA1828 [new locus tag: SA_RS10490 ]
  • symbol: SA1828
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2066368..2068077
  • length: 1710
  • essential: no DEG

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGGAAACAGGTAAAAGTGATGTACTTGATAAAATTGAAAAAATTAATAAAAAAGATAGT
    GCCTTACAAGAAATTATACCGAAAGGCTATGAAATTGAACATCATCAATGCGGTGTTGCC
    TTATACCAACTTATACCAAGTAAAAAAGAAGGCGAACCAGATAAAAAGGTTTTTATCACA
    AATACAATCCCTCAAATTACTGAACGCTTTGAAGATATTGAGAGTAACGAAGTTAGCTTT
    AATATGCTTTTCTATGACAATAAAACGCCAGTAAATATAGCTGTGAGTGCCGAAGAAATT
    TCAGATAGTCGTCAACTCTTGAAATTGGTTAATAAAAAGCTAGATGTAACATCGTCGACA
    TCTACTAAACTTGTTGACTATATTAATGTATCTAAAAGGTATAATCCACCATTAAATGTT
    AAAGTTGCAACGCGTTTGGGGCATGTGAAAGGTTATTTTATTTATCCTTATCAAGAAGTA
    ATGAAAGACAGCAATGTCAAGTTGTTTAGCAATGATAAAGGGTTTCAAAAGTTAATAGAC
    TCTTTTCGAAGTAAAGGAACACTACAAGGTTACTCTAAAAAGGTGTTTGCTCAAATAAAA
    GATTTACCAATGGTAATGGTTATGTTGTATGCATCTTTAGGCTCAGTTTTATTAAGAGAA
    TTTGGATTACAACCCTTTATTGTAGAAATATCAGGTAGTACATCCACAGGTAAAACATTC
    ACACTCAACTTAGTATCAAGTGTTTGGGGAACCAGTGACCTTATTACGACATGGAGTTCT
    ACTCAAAATAGTATTGAATCAATGGCGTCATTTTTGAACTCATTTCCAATGTTTAAAGAT
    GATACGCGTAACACACATCCTAAGTTTGTTACCAGTACCACATATAACTTTTCTAGTGGT
    GAAAGTAAATCGAGAAGTAATATTAATTTAACGCTAAATGCTAAAAAAGAATGGCGAAAT
    ATTTTAATTTCTACTGGTGAATCATCTATCGCAAATATGGCTGATGAAAAAGCGGGTGTA
    TCAGCACGTGTAGTTACACTACAAGATCCACCATATCCAGATAATTTTGATTTTACCACA
    TTAGACAAATCGTTTAGGGAGAACTATGGAACGTTAGGGTTGGCATTTATTAAACAATAT
    GAGTCTAAAAAAGACGTGTATAAGAACGCTTTTGAGAGCTATCAACGGTATTTTAATCAA
    AAAGGTAGTAATGAAATCATGCAACGTTTAGGACGTGCCTTTGCGTTACTACAAGTTACC
    GGTGAGGTTTTGAATGATATTGATGGGTTTGAACATGACCATTTTAAAATTATCGAACAA
    GCCTATGACAGCATGGTTAAAAACAATAAGACGATTGATAAACCTAAGCAACTGTTAGAG
    GAACTATTACAATATTTAGATGCGAATAGAAATAATATTGTAGGTGACGGTTATGATTCA
    GTAAATTACGGAGATGTTAAAGCGGTATATAAACATGATTTTCTTTGTATTAAAAACGAA
    ACTGTTAAAAATAAATTAGGACACGAAATGCAGACGATTACAGGGCAATGGGACAAAAAA
    GGTTATTTAATAAAAGATAAAAAAAGAATTCAAAAACAAGTAAAACATAAATCTCAAAGG
    CATCTGGGTTATGCGATTAAAAAAGAAATAATTGAAGAACTAGGATTTGATTTCTCGATT
    TCACATAATCCATATACAGAAAGTTATTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1710

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA1828 [new locus tag: SA_RS10490 ]
  • symbol: SA1828
  • description: hypothetical protein
  • length: 569
  • theoretical pI: 8.99487
  • theoretical MW: 64960.3
  • GRAVY: -0.529525

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Putative DNA helicase, superantigen-encoding pathogenicity islands SaPI
    Phages, Prophages, Transposable elements, Plasmids Pathogenicity islands Staphylococcal pathogenicity islands SaPI  Putative DNA helicase, superantigen-encoding pathogenicity islands SaPI
  • PFAM:
    P-loop_NTPase (CL0023) DUF927; Domain of unknown function (DUF927) (PF06048; HMM-score: 142.8)
    and 2 more
    no clan defined CENP-K; Centromere-associated protein K (PF11802; HMM-score: 16.6)
    P-loop_NTPase (CL0023) T2SSE; Type II/IV secretion system protein (PF00437; HMM-score: 11.1)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005162
    • TAT(Tat/SPI): 0.000412
    • LIPO(Sec/SPII): 0.001083
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • METGKSDVLDKIEKINKKDSALQEIIPKGYEIEHHQCGVALYQLIPSKKEGEPDKKVFITNTIPQITERFEDIESNEVSFNMLFYDNKTPVNIAVSAEEISDSRQLLKLVNKKLDVTSSTSTKLVDYINVSKRYNPPLNVKVATRLGHVKGYFIYPYQEVMKDSNVKLFSNDKGFQKLIDSFRSKGTLQGYSKKVFAQIKDLPMVMVMLYASLGSVLLREFGLQPFIVEISGSTSTGKTFTLNLVSSVWGTSDLITTWSSTQNSIESMASFLNSFPMFKDDTRNTHPKFVTSTTYNFSSGESKSRSNINLTLNAKKEWRNILISTGESSIANMADEKAGVSARVVTLQDPPYPDNFDFTTLDKSFRENYGTLGLAFIKQYESKKDVYKNAFESYQRYFNQKGSNEIMQRLGRAFALLQVTGEVLNDIDGFEHDHFKIIEQAYDSMVKNNKTIDKPKQLLEELLQYLDANRNNIVGDGYDSVNYGDVKAVYKHDFLCIKNETVKNKLGHEMQTITGQWDKKGYLIKDKKRIQKQVKHKSQRHLGYAIKKEIIEELGFDFSISHNPYTESY

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]