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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA2134 [new locus tag: SA_RS12260 ]
  • pan locus tag?: SAUPAN005841000
  • symbol: SA2134
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA2134 [new locus tag: SA_RS12260 ]
  • symbol: SA2134
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2399269..2399877
  • length: 609
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGGATTTCGTTAATAATGATACAAGACAAATTGCTAAAAACTTATTAGGTGTCAAAGTG
    ATTTATCAGGATACCACTCAAACGTATACAGGCTACATCGTGGAAACGGAAGCTTACTTA
    GGTTTGAATGATCGTGCGGCTCATGGCTATGGCGGTAAAATAACACCTAAAGTCACGTCA
    TTATATAAACGTGGTGGTACAATTTATGCACATGTCATGCATACGCATTTACTCATTAAT
    TTTGTAACAAAATCTGAAGGTATACCTGAAGGCGTACTTATACGCGCAATTGAACCAGAA
    GAAGGTTTATCCGCTATGTTCCGTAACAGAGGTAAGAAAGGCTACGAGGTAACGAATGGC
    CCAGGAAAATGGACTAAGGCATTTAACATTCCACGGGCTATCGATGGCGCTACGTTAAAT
    GACTGTAGATTGTCTATTGATACTAAGAATCGTAAATATCCTAAAGATATTATTGCTAGT
    CCACGAATCGGTATTCCAAATAAAGGTGATTGGACACATAAATCTTTACGTTACACAGTG
    AAAGGTAATCCATTTGTGTCTCGCATGCGTAAATCAGATTGTATGTTTCCCGAAGATACT
    TGGAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    609

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA2134 [new locus tag: SA_RS12260 ]
  • symbol: SA2134
  • description: hypothetical protein
  • length: 202
  • theoretical pI: 10.103
  • theoretical MW: 22770.9
  • GRAVY: -0.547525

Function[edit source | edit]

  • reaction:
    EC 3.2.2.-?  ExPASy
  • TIGRFAM:
    Genetic information processingDNA metabolismDNA replication, recombination, and repairDNA-3-methyladenine glycosylase (TIGR00567; EC 3.2.2.-; HMM-score: 156.9)
  • TheSEED:  
    DNA MetabolismDNA repairDNA Repair Base Excision DNA-3-methyladenine glycosylase II (EC 3.2.2.21) 
  • PFAM:
    no clan definedPur_DNA_glyco; Methylpurine-DNA glycosylase (MPG) (PF02245; HMM-score: 161)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.118
    • Ymax_pos: 12
    • Cmax: 0.122
    • Cmax_pos: 50
    • Smax: 0.194
    • Smax_pos: 5
    • Smean: 0.138
    • D: 0.126
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MDFVNNDTRQIAKNLLGVKVIYQDTTQTYTGYIVETEAYLGLNDRAAHGYGGKITPKVTSLYKRGGTIYAHVMHTHLLINFVTKSEGIPEGVLIRAIEPEEGLSAMFRNRGKKGYEVTNGPGKWTKAFNIPRAIDGATLNDCRLSIDTKNRKYPKDIIASPRIGIPNKGDWTHKSLRYTVKGNPFVSRMRKSDCMFPEDTWK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]