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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA2300 [new locus tag: SA_RS13185 ]
  • pan locus tag?: SAUPAN006141000
  • symbol: SA2300
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA2300 [new locus tag: SA_RS13185 ]
  • symbol: SA2300
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2584066..2585343
  • length: 1278
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    ATGAAGGAAAAACGAACTAACGTAAGGTGGATGTTCGCGCTTGCGTTCTTCTTTATTGGG
    GTTATTGCGTATATGGATAGAGCAAACATTTCATATATCGCTAAACAAATGATGGATGAT
    TTAGGGATGACCAAACCACAATTTGGTTTATTGGCATCATTCTTCTCTCTAGGTTATGCA
    TTAATGCAAGTACCATCGGGGATGTTGGCTGAAAAATTCGGTCCACGTAAGATGATTACA
    ATTGCATTAGTTTGGTGGAGTGCATTTACAATCTTAACGGGTATGATTAAGAACCACGGT
    TTAATTTATTTAGTGAGATTCTTATTTGGTGTGGGTGAGGCGCCAATGTATCCTTCTAAT
    GCTGTGTTTAACTCATTTTGGTTCTCTAAAAATGAAAAAGGTAGAGCATCAAGTGCATTA
    TTAGCAGGATCATATTTCGGACCTGTATTAGCACCAATAGTTACAATTGCTATTGTTAAC
    GCATTTAACTGGCAAGCAGTATTTTACATTTTTGGTGCAGTAGGTATTTTAATGGCTGTA
    TTATGGGCGATTATTGCCAAAGACTTACCTGAGCAACATAGAATGGTTAATGAAGCGGAG
    AAACGTTTCATTATGGAAAATCGTGATATCGTAGCTACTGAAAAGTCATCACCACCATGG
    AATAATTTCTTTAAACGTTTTAGCTTCTATGCAATTGCAATTCAATACTTTGTTGTACAA
    TTTATCATTACATTATTCTTAATTTGGTTACCGACGTATTTAACAGAAGTATTCCACGTT
    AACTTTAAAGAAATGAGCATTAGTTCATTACCTTGGTTATTAATGTTCTTCTTAATCTTA
    TCAGCAGGTGCAATTTCTGACCGTGTATTAGGATTAGGTCGTTCAAAATTCGTAGCTAGA
    GGTGTAATTGCAATCGCAGGATTTATTGTGTTTGCAGTTTCAATTATCTTTGCTGTACGT
    ACAGGAAATTTATATGTAAGTATTTTCTGGTTATCACTAGGTCTTGGTGGTATCGGTATT
    TCAATGGGTATGAGTTGGGCTGCAGCAACTGACTTAGGACGTAACTTCTCTGGTACAGTA
    TCAGGGTGGATGAACTTATGGGGTAATATAGGTGCATTAATCAGTCCGCTATTAGCAGGT
    CTATTCGTAGAACATTTAGGTTGGACAATGACATTCCAATTGTTAATCGTTCCAGCAGTA
    ATCGCTGTGATTATGTGGTTCTATGTGAAACCAGATCAACCTTTAATTGTTAGTGATGAT
    AAAGCAATAGAAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1278

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA2300 [new locus tag: SA_RS13185 ]
  • symbol: SA2300
  • description: hypothetical protein
  • length: 425
  • theoretical pI: 10.0983
  • theoretical MW: 47625.3
  • GRAVY: 0.676706

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismTransport and binding proteinsCarbohydrates, organic alcohols, and acidsD-galactonate transporter (TIGR00893; HMM-score: 236.8)
    MetabolismTransport and binding proteinsAnionsNa(+)-dependent inorganic phosphate cotransporter (TIGR00894; HMM-score: 169.7)
    MetabolismTransport and binding proteinsCarbohydrates, organic alcohols, and acidsphosphoglycerate transporter family protein (TIGR00881; HMM-score: 134.4)
    MetabolismTransport and binding proteinsCarbohydrates, organic alcohols, and acidsMFS transporter, aromatic acid:H+ symporter (AAHS) family (TIGR00895; HMM-score: 90.9)
    MetabolismTransport and binding proteinsOtherglycerol-3-phosphate transporter (TIGR00712; HMM-score: 72.8)
    4-hydroxyphenylacetate permease (TIGR02332; HMM-score: 64.3)
    MetabolismTransport and binding proteinsAnionsnitrite transporter (TIGR00886; HMM-score: 54.3)
    multidrug resistance protein (TIGR00880; HMM-score: 50.6)
    drug resistance transporter, Bcr/CflA subfamily (TIGR00710; HMM-score: 48.2)
    MetabolismTransport and binding proteinsCarbohydrates, organic alcohols, and acidsoxalate/formate antiporter family transporter (TIGR00890; HMM-score: 39.7)
    Cellular processesCellular processesToxin production and resistancedrug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family (TIGR00711; HMM-score: 37.4)
    MetabolismTransport and binding proteinsOtherdrug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family (TIGR00711; HMM-score: 37.4)
    MetabolismTransport and binding proteinsAmino acids, peptides and aminesamino acid/peptide transporter (Peptide:H+ symporter) (TIGR00924; HMM-score: 33.6)
    MetabolismTransport and binding proteinsCarbohydrates, organic alcohols, and acidsMFS transporter, sialate:H+ symporter (SHS) family (TIGR00891; HMM-score: 32.3)
    MetabolismTransport and binding proteinsCations and iron carrying compoundscation transport protein (TIGR00898; HMM-score: 28.8)
    synaptic vesicle protein SV2 (TIGR01299; HMM-score: 24.5)
    MetabolismTransport and binding proteinsCations and iron carrying compoundsH+ Antiporter protein (TIGR00900; HMM-score: 20.3)
    MetabolismTransport and binding proteinsAnionsphosphate:H+ symporter (TIGR00887; HMM-score: 16.3)
    MetabolismTransport and binding proteinsCarbohydrates, organic alcohols, and acidspolyol permease (TIGR00897; HMM-score: 15.7)
    MetabolismTransport and binding proteinsOthercyanate transporter (TIGR00896; HMM-score: 13.2)
  • TheSEED:  
    Uncharacterized MFS-type transporter 
  • PFAM:
    MFS (CL0015) MFS_1; Major Facilitator Superfamily (PF07690; HMM-score: 219.6)
    Sugar_tr; Sugar (and other) transporter (PF00083; HMM-score: 15.3)
    MFS_4; Uncharacterised MFS-type transporter YbfB (PF06779; HMM-score: 12.4)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0
    • Signal Peptide Possibility: 0
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.172
    • Ymax_pos: 11
    • Cmax: 0.127
    • Cmax_pos: 26
    • Smax: 0.381
    • Smax_pos: 5
    • Smean: 0.299
    • D: 0.222
  • predicted transmembrane helices (TMHMM): 11

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MKEKRTNVRWMFALAFFFIGVIAYMDRANISYIAKQMMDDLGMTKPQFGLLASFFSLGYALMQVPSGMLAEKFGPRKMITIALVWWSAFTILTGMIKNHGLIYLVRFLFGVGEAPMYPSNAVFNSFWFSKNEKGRASSALLAGSYFGPVLAPIVTIAIVNAFNWQAVFYIFGAVGILMAVLWAIIAKDLPEQHRMVNEAEKRFIMENRDIVATEKSSPPWNNFFKRFSFYAIAIQYFVVQFIITLFLIWLPTYLTEVFHVNFKEMSISSLPWLLMFFLILSAGAISDRVLGLGRSKFVARGVIAIAGFIVFAVSIIFAVRTGNLYVSIFWLSLGLGGIGISMGMSWAAATDLGRNFSGTVSGWMNLWGNIGALISPLLAGLFVEHLGWTMTFQLLIVPAVIAVIMWFYVKPDQPLIVSDDKAIEK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator: CcpA
    CcpA (TF) important in Carbon catabolismRegPrecise

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]