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NCBI: 10-JUN-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL0042 [new locus tag: SACOL_RS00225 ]
  • pan locus tag?: SAUPAN000445000
  • symbol: ccrA1
  • pan gene symbol?: ccrA
  • synonym:
  • product: cassette chromosome recombinase A1

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL0042 [new locus tag: SACOL_RS00225 ]
  • symbol: ccrA1
  • product: cassette chromosome recombinase A1
  • replicon: chromosome
  • strand: -
  • coordinates: 47998..49347
  • length: 1350
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGAAACAAGCAATAGGTTACTTACGACAGAGCACTACAAAGCAACAATCCTTAGCAGCA
    CAAAAACAAACCATCGAGGCATTAGCCAAAAAACATAATATTCAATACATTACCTTTTAT
    AGCGATAAGCAATCAGGACGCACTGATAAGCGGAACGGTTACCAACAAATTACTGAACTG
    ATTCAACAAGGACAATGTGATGTATTATGTTGTTACAGATTAAACCGACTTCATCGCAAT
    CTTAAAAATGCATTAAAACTCATGAAATTGTGTCAAAAATACCATGTCCATATCTTAAGC
    GTTCATGATGGCTATTTTGATATGGATAAAGCATTCGATCGGCTCAAACTCAATATTTTC
    ATCAGCTTGGCCGAACTAGAATCTGATAATATAGGCGAACAAGTCAAAAATGGAATCAAA
    GAAAAAGCGAAACAAGGTAAAATGATTACAACACATGCACCCTTTGGGTATCACTATCAT
    AATGGTACTTTCACGATAGACACAGTAAAAGCACCAACAGTAAAAGCTGTGTTCAATTAT
    TACCTTCAAGGTTATGGTTATAAAAAAATTGCGCAATACTTAGAAGCTGATGATAAATTC
    ATTAATCGTAAGCCCTATCAAGTGCGTAATATTATCCTTAACCCTAATTACTGTGGCCGT
    GTTATCAATCAATACGGACAATATGAAAACATGTTCCCAGCTATTGTCAGTACAACGATA
    TACGAAGAAGCTCAAGTTACCCGAACTCAGAAACCAGTAAAACGTAAGCCGTCAGAAAAC
    CAACTCAAACAAAAAATCAAATGTCCTTATTGTGATTCAACACTAACTAATATGACCATT
    AGAAAAAAGCACCATACATTACGTTATTATGTTTGTCCTCAAAATATGAATGCATCTCGT
    TTTGTCTGTGAATTCAAAGGGATCAACGCACAAGAATTAGAAACAAGTGTTTTAGCGACT
    TGTCAGGACTTCTTTCAAAATCAACAGCTCTATTCAAAAATAAACCATACTATTCAACAA
    CGACTCAAAAGACAAAGAGATATAGAAACTAAAACTACACTCAATCACGAGCAGCTGATA
    GAAAAATTAGCCCAAGACAAAATTGATGCAGAAACGTTCAGAGAACAAACGCAATCATTA
    CGTCAGCAATCAAAACCTATATCATCAATCAGTACGTATCAAATTCGAAAAGCTTTCCAA
    AACATCATTCAACAACGTTTCACGCTAAACATGTTGTACCCCTATATTGATGAAATTAAT
    ATTTCTAAAAATAAAAGCCTCGCTGGCATCTATTTCAAAAATGAACCACTGAATATTGTA
    AAGCAGACTATGGAATTATCAATTGTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1350

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL0042 [new locus tag: SACOL_RS00225 ]
  • symbol: CcrA1
  • description: cassette chromosome recombinase A1
  • length: 449
  • theoretical pI: 9.93849
  • theoretical MW: 52580.1
  • GRAVY: -0.659688

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Hypothetical proteinsConservedconserved hypothetical protein (TIGR02328; HMM-score: 15.1)
  • TheSEED:  
    Cassette chromosome recombinase A 
  • PFAM:
    no clan definedResolvase; Resolvase, N terminal domain (PF00239; HMM-score: 127.4)
    Recombinase; Recombinase (PF07508; HMM-score: 43.7)
    Zn_Beta_Ribbon (CL0167) Zn_ribbon_recom; Recombinase zinc beta ribbon domain (PF13408; HMM-score: 30.6)
    HTH (CL0123) HTH_21; HTH-like domain (PF13276; HMM-score: 15.2)
    no clan definedPyrI_C; Aspartate carbamoyltransferase regulatory chain, metal binding domain (PF02748; HMM-score: 13.9)
    Dim_A_B_barrel (CL0032) DUF4242; Protein of unknown function (DUF4242) (PF14026; HMM-score: 13)
    no clan definedTAFH; NHR1 homology to TAF (PF07531; HMM-score: 12.9)
    Zn_Beta_Ribbon (CL0167) Ogr_Delta; Ogr/Delta-like zinc finger (PF04606; HMM-score: 11.9)
    Chelatase (CL0043) ZnuA; Zinc-uptake complex component A periplasmic (PF01297; HMM-score: 11.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.238
    • Ymax_pos: 20
    • Cmax: 0.215
    • Cmax_pos: 20
    • Smax: 0.585
    • Smax_pos: 19
    • Smean: 0.251
    • D: 0.243
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNYYLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTIYEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASRFVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLIEKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEINISKNKSLAGIYFKNEPLNIVKQTMELSIV

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]