NCBI: 10-JUN-2013
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus COL
- locus tag: SACOL0443 [new locus tag: SACOL_RS02235 ]
- pan locus tag?: SAUPAN001970000
- symbol: SACOL0443
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SACOL0443 [new locus tag: SACOL_RS02235 ]
- symbol: SACOL0443
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 446938..447306
- length: 369
- essential: unknown other strains
⊟Accession numbers[edit source | edit]
- Gene ID: 3236486 NCBI
- RefSeq: YP_185333 NCBI
- MicrobesOnline: 911913 MicrobesOnline
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
- 1
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361TTGAAAACGATTTTAAAAACAATAACATATCTTGTACTTACTATCATTGGCGCTTATGCT
GCTTTATTCATTTTAAAAACAATAGACTCCCATGGTATAACAGATCAATTTAACCCATTA
GTAAAGAAGGATGATTCTTATGTTAAAACGACAGAGGTGTCTACTAGAATGGATGATCAA
CTCCGAAGTTATAGTCAAAGTGTTTTTAATAAAGAAGGGAAAGAGACGCAATTAATGTAT
ACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCAT
GTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTACCAAAGAAAGCATTAGACAAACTG
AGTCGATAA60
120
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369
⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SACOL0443 [new locus tag: SACOL_RS02235 ]
- symbol: SACOL0443
- description: hypothetical protein
- length: 122
- theoretical pI: 9.26271
- theoretical MW: 14125.2
- GRAVY: -0.477869
⊟Function[edit source | edit]
- reaction:
- TIGRFAM: Hypothetical proteinsConservedconserved hypothetical protein (TIGR01655; HMM-score: 59.8)
- TheSEED:
- PFAM: no clan definedDUF1093; Protein of unknown function (DUF1093) (PF06486; HMM-score: 53.4)Trigger_N; Bacterial trigger factor protein (TF) (PF05697; HMM-score: 16.3)Trigger_C (CL0262) SurA_N_3; SurA N-terminal domain (PF13624; HMM-score: 12.4)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 3.33
- Cellwall Score: 3.33
- Extracellular Score: 3.33
- Internal Helix: 1
- LocateP: N-terminally anchored (No CS)
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular Possibility: 0.17
- Signal Peptide Possibility: 0
- N-terminally Anchored Score: 5
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- Ymax: 0.233
- Ymax_pos: 21
- Cmax: 0.218
- Cmax_pos: 21
- Smax: 0.479
- Smax_pos: 1
- Smean: 0.305
- D: 0.261
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MKTILKTITYLVLTIIGAYAALFILKTIDSHGITDQFNPLVKKDDSYVKTTEVSTRMDDQLRSYSQSVFNKEGKETQLMYTATFDVKPHRYLKITHKGHHVETFEEVEKEEVPKKALDKLSR
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- MicrobesOnline: SACOL0443 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]