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NCBI: 10-JUN-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL0807 [new locus tag: SACOL_RS04150 ]
  • pan locus tag?: SAUPAN002651000
  • symbol: SACOL0807
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SACOL0807 [new locus tag: SACOL_RS04150 ]
  • symbol: SACOL0807
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 830123..830617
  • length: 495
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGCTATTTTATTTATTTCATTTTACAATCAGCTTTATATCAACAGTACTTTTCTCTATC
    ATTTTCAATGCACCCAAACGCCTCTTAGTAGCATGTGGATTTGTGGGTGCCATTGCATGG
    ACGATTTACCAATTAACGGTAGATTTAGAGTTTGGAAAAGTTGGCGCTTCATTTTTGGGA
    AGCTTAATTTTAGGCTTAATGAGTCATACTATGAGTCGCAGATATAAACGACCGGTAATT
    ATATTCATAGTGCCAGGCATTATACCATTAGTACCTGGTGGTGCAGCTTATCAAGCGACT
    CGTTTTTTAGTATCAAATGATTATACAAGTGCTGTAAATACATTTTTAGAAGTTACACTG
    ATTTCAGGTGCGATTGCTTTCGGTATATTAGTTTCTGAAATTCTATATTACCTATACACA
    CGTATCAAACAACTGTATGGTAAAATCAAAGGTAAGACATATAAAAAATCTTACAACATG
    AATAATAGAGTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    495

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SACOL0807 [new locus tag: SACOL_RS04150 ]
  • symbol: SACOL0807
  • description: hypothetical protein
  • length: 164
  • theoretical pI: 10.3085
  • theoretical MW: 18389.8
  • GRAVY: 0.64878

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Integral membrane protein
  • PFAM:
    UMP_1 (CL0470) ThrE_2; Threonine/Serine exporter, ThrE (PF12821; HMM-score: 130.9)
    and 2 more
    ThrE; Putative threonine/serine exporter (PF06738; HMM-score: 34.6)
    no clan defined DUF3329; Domain of unknown function (DUF3329) (PF11808; HMM-score: 11.6)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • LocateP: Multi-transmembrane(Lipid modified N-termini)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPII)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: LLVACGF
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.018194
    • TAT(Tat/SPI): 0.000675
    • LIPO(Sec/SPII): 0.043159
  • predicted transmembrane helices (TMHMM): 5

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MLFYLFHFTISFISTVLFSIIFNAPKRLLVACGFVGAIAWTIYQLTVDLEFGKVGASFLGSLILGLMSHTMSRRYKRPVIIFIVPGIIPLVPGGAAYQATRFLVSNDYTSAVNTFLEVTLISGAIAFGILVSEILYYLYTRIKQLYGKIKGKTYKKSYNMNNRV

Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]