From AureoWiki
Jump to navigation Jump to search

NCBI: 10-JUN-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL1135 [new locus tag: SACOL_RS05795 ]
  • pan locus tag?: SAUPAN003353000
  • symbol: SACOL1135
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SACOL1135 [new locus tag: SACOL_RS05795 ]
  • symbol: SACOL1135
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1143659..1144798
  • length: 1140
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGAAAAGCGTTGGCTTAATCACAGAATATAATCCCTTTCATAATGGGCATCAATATCAT
    ATTAATCAATCTAAAAAACTTACAAATGCTGACGTTACTATTGCAATAATGAGTGGTAAC
    TTTGTCATGCGTGGCGAACCAGCAATCTATAATAAGTTTACTCGTGCAAAAATGGCATTA
    TCAACAGCTGATTTAGTTATCGAACTACCAGCAACTGCCAGTTTATCATCTGGCGATCAT
    TTTGCCGAACTAGCAGTTAAAGTCGCAGATTATATGAGTGTCGATACAATTGCATTTGGT
    AGTGAAAATAATGATATCAAAACATTAAAGCAATTAGCACACAGCATTAATGAAATTGAA
    CAATCTGAATCCTTTTCACAAAAAGTAAAAGAAGGTAAAAGCTACCCTCGTATCATTAGC
    GAATTATTAGAGCATCATGAAGCACTAGCAAGTCCTAACAACATACTTGGTATTAGTTAC
    CTGAAAGCAATTGCTAAAAATGCTAAAAACATCAATGCAATTTCTATCAAACGAGAAAAT
    GCTCAACATCATGATTCATTAATTCAACACCATCAGTTTGCAAGTGGTACATCTATTAGA
    ACATCAATCATTAGTCAAGATGATCATTGGCATCATGTGGTACCTAAAGATATTCAACAC
    TTGTACGTAACACCTCATATAACATTAAATCAAATATTTCCATATTTGAAATATCAAATC
    ATAGCTATGACTACAGATTCATTAAAAAATATTTATACTGTTACTGAAGGTTTTGAAAAT
    CGTTTGAAATCTAACATTTATGAAGCAACTGATTTTCATCATTTTGTAAAATTACTAAAA
    ACAAAGCGTTATACATATACGCATATCCAAAGACTGTTAATGAATGTATTATTAAACATT
    AAACCTACAGATGTTACGAGTAACATTCACGCAGTTAAAGTATTAGCGATGAACGACCGT
    GGCAGACAATATTTAAAGCATTTAAAAACAGCGTTCCCAGAAAGACAATATATAACCAAT
    ATTAACAAAAGCAATGCACATTACTTCACAAATGAAATCAAAGCAACACACATATACAAT
    GCAATAAGCGGGCAACAACAAACAGATTTCAACACGCCTGTCATACAGCAATATCGTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SACOL1135 [new locus tag: SACOL_RS05795 ]
  • symbol: SACOL1135
  • description: hypothetical protein
  • length: 379
  • theoretical pI: 9.60936
  • theoretical MW: 43239.9
  • GRAVY: -0.393404

Function[edit | edit source]

  • TIGRFAM:
    cytidyltransferase-like domain (TIGR00125; HMM-score: 26)
    and 1 more
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Pyridine nucleotides nicotinamide-nucleotide adenylyltransferase (TIGR01527; EC 2.7.7.1; HMM-score: 17.7)
  • TheSEED  :
    • tRNA(Met) N4-acetylcytidine(34) synthetase
    CBSS-269801.1.peg.1715  FIG007079: UPF0348 protein family
  • PFAM:
    HUP (CL0039) HIGH_NTase1; HIGH Nucleotidyl Transferase (PF05636; HMM-score: 403)
    and 2 more
    CTP_transf_like; Cytidylyltransferase-like (PF01467; HMM-score: 22.5)
    no clan defined LsmAD; LsmAD domain (PF06741; HMM-score: 15.8)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.007469
    • TAT(Tat/SPI): 0.0002
    • LIPO(Sec/SPII): 0.000333
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MKSVGLITEYNPFHNGHQYHINQSKKLTNADVTIAIMSGNFVMRGEPAIYNKFTRAKMALSTADLVIELPATASLSSGDHFAELAVKVADYMSVDTIAFGSENNDIKTLKQLAHSINEIEQSESFSQKVKEGKSYPRIISELLEHHEALASPNNILGISYLKAIAKNAKNINAISIKRENAQHHDSLIQHHQFASGTSIRTSIISQDDHWHHVVPKDIQHLYVTPHITLNQIFPYLKYQIIAMTTDSLKNIYTVTEGFENRLKSNIYEATDFHHFVKLLKTKRYTYTHIQRLLMNVLLNIKPTDVTSNIHAVKVLAMNDRGRQYLKHLKTAFPERQYITNINKSNAHYFTNEIKATHIYNAISGQQQTDFNTPVIQQYR

Experimental data[edit | edit source]

  • experimentally validated: PeptideAtlas
  • protein localization: Cytoplasmic [1] [2]
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

  1. Dörte Becher, Kristina Hempel, Susanne Sievers, Daniela Zühlke, Jan Pané-Farré, Andreas Otto, Stephan Fuchs, Dirk Albrecht, Jörg Bernhardt, Susanne Engelmann, Uwe Völker, Jan Maarten van Dijl, Michael Hecker
    A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome.
    PLoS One: 2009, 4(12);e8176
    [PubMed:19997597] [WorldCat.org] [DOI] (I e)
  2. Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
    The Staphylococcus aureus proteome.
    Int J Med Microbiol: 2014, 304(2);110-20
    [PubMed:24439828] [WorldCat.org] [DOI] (I p)

Relevant publications[edit | edit source]