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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 10-JUN-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL1579 [new locus tag: SACOL_RS08045 ]
  • pan locus tag?: SAUPAN004096000
  • symbol: SACOL1579
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL1579 [new locus tag: SACOL_RS08045 ]
  • symbol: SACOL1579
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1614544..1617039
  • length: 2496
  • essential: unknown

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    ATGAATTTAAAAGCACCGTATGCAGGTTTAAGAGATAATTTGTTATTAACGAAAACTGGC
    GAAGTTTGGGCGTATTATCGTGTTCGTTCTGAGTCTATATCAACAGCAAATTATGATGCA
    AAAGAAGAATCAAAAAAGCGTATGCGTTATTTTTTAGAGTCGATTAAAGGTTATCAAGAT
    TTTCATTTTGAAATGTATGACCACGATTTAGATTTGCGAAATAAATTTAAAGAAATTAGT
    AAAGATTTTGATGATGAAGCTTTTAATGTAGCTGAATATTATTCAAAAGAAACTATTGAC
    GTATTAGAACAAGAATTACAAATGATTACGCATAATTCTTTTGTTATGGGTGTTAAAATA
    CGTGAATTAGCTGACGATGCAGTTACACTTAAAGAGATTTTAAAAAGTACATTATCAGAT
    ACGGCTGAGCGTATTGTTTCGAATTTTGGTTTTGATGTGAATTTAGACGATAAAATTTTA
    GATAAGTATAAAACATTTGAACGAGATTTGGCTGATAGTTTTCTAGGTATTGGAGGCGAG
    CGTTTAACTGAGAATGAATTGGCTTATATTATTAGAAAGCCTTTTATTTCAAATGCAACA
    CATGACGTACAGGAAGAATCTTCAAGAAGAGCTATTACAGATATTTATAATGCAGTAATT
    GACCCTACTCGCTTGAGTGTTTTAGAAGTTGAAAATGATAACGAGAAATTTTATACAACA
    ACAGTTGTTGTTGATGATTTTCCGTTAGATATGGAATATACACATTTATTTGAGAAAGCT
    CAAAATATGCCTTTTCCGGTTGAATGCCATGTAAAAGCAAAAATCATTAATAATGAGAAA
    GTTAAGAAAAAATTTGACCGTGCGAAAATAAATCATAAACAACAAGCAAAAGAAAAGCAA
    GATACTGGCGACAGTGCTTCGGAAGATGTTCAAGATAATTTGTTTGTATTGAATCAAATG
    GAACGAGAAGTGACTGGCTCAGGTGTATTTATTGAGTGGGTATTTATGTTTGTAATTAAA
    AGTGATGATTATAGAGATTGTAAACGTAAAGCAAAGCGTTTGATGAAACGATTAAAGGAA
    ACTCAAATATATGCAGTTAATCCATTAGCTGACCAGTTACAATTGTTTTATCAATGTTTA
    CATGGTAATGATTTATTTATTAATAAGTATTGGTTACAAAGAACAACGGCAACAGGTATA
    GCAGAGAATTTATTTGGTGTGTCTCAAAGTTTGGGAACAAAAACGGGTTTTTATATAGGG
    CGTATTGATAAATTTATACGTTCTGTTTCACGTGAGGAAGCTGTTGCAAGTTCAAGGGAT
    ATAATTTTGTTTAGTTTATTGTTGGCCGCAAAAGGTATTAAGGGGGCTGTCAGTGATAGT
    CCGCATGTTTTAATTACTGGTCAAACTGGTAAAGGTAAATCATTTTTAGCAAAATTATTA
    TGGATTTATACATCATTTTTTAAAGGTCAAATGTTGTACTGGGATCCAAAATCTGAGTTT
    GCAGAATGGTTTGACAGAGTAACAGAAAGTAAGGAAATGCAAGAAAAGTATCCCCTATTT
    ATTAATCATTTAAAAACATTTAAATATGTAACATTGAATTATGAAGATTCAACCAATTAT
    GGTTGTCTAGACCCTATTGTATTTTTAGATGGTATTGAAGCTAATGAGATGTTGAAATCA
    GTGTTTGATGAAATTAAATCTTTTGAAAATTATCATCATATTGAAACAGCAATTTATCAA
    GCTATTTCTGATACGGTTGAAGAACGTGAAAATGGTAAAAAAGTTGGTTCATTAAATGTA
    ATTGAAAAATTACAGAATAATGAAGATGAGCATGTAAAAAATGCAGGCGATTTATTATTT
    GAAAAAACGCAAAACAATATTTTAAAACTTGTTTTTAGTGATGGTACGAATCCAGCTTTA
    AATATTCAAGAAAAAGCAACTATTTTACAGGTTAAAGGTTTAGATATGCCTAAAGCAGAT
    GATGATACATCAAGTTATTCAACAAGTGAGAAAAATGGGATTACATTAATGTTATTAATT
    GGTAAGTTTTTAGAGAAATTCGGTTCTCGTAGAGATGTTCAAACGACTATATTTATTGAT
    GAGGGTTGGGCTTTTAGTGCTTCAAGACAAGGTAAAAAAGTTGGTAAGCGTATAAAAAGA
    ACGGGACGTTCTGAGAATAATTCACTTGTATTTATTACACAATCGGTAAAAGATAAAGCA
    GATGATGATGGTGGTAACTTTGGTTGTCATTTTGCATTTGATGAAAAAGATGAACGTGAG
    GATATTTTAAAATCTTTAGGCTTAGAATATTCAAAAGAATCTCCTGAAAATATGGAGATG
    TTGAAAGATTTGAAGAAAGGTCAATGTATATTCAGTGATTTTTATGGACGTGTTGGAAAA
    ATGGTTGTACATTGTCCATTTGAGGAAATGACTGAAGCATTTAGAACACAAGAAGATTCT
    GCAAGCTCTAAAGCTGAAGAAAAATTTGCGATGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2496

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL1579 [new locus tag: SACOL_RS08045 ]
  • symbol: SACOL1579
  • description: hypothetical protein
  • length: 831
  • theoretical pI: 5.14155
  • theoretical MW: 95592.5
  • GRAVY: -0.513598

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    conjugal transfer protein transposon-related 
  • PFAM:
    P-loop_NTPase (CL0023) AAA_10; AAA-like domain (PF12846; HMM-score: 314.4)
    DUF87; Domain of unknown function DUF87 (PF01935; HMM-score: 26.7)
    Rep (CL0169) Relaxase; Relaxase/Mobilisation nuclease domain (PF03432; HMM-score: 16.2)
    P-loop_NTPase (CL0023) Sigma54_activat; Sigma-54 interaction domain (PF00158; HMM-score: 15)
    no clan definedSLAM; Signaling lymphocytic activation molecule (SLAM) protein (PF06214; HMM-score: 14.1)
    WGR; WGR domain (PF05406; HMM-score: 13.7)
    P-loop_NTPase (CL0023) ABC_tran; ABC transporter (PF00005; HMM-score: 12.7)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 1.78
    • Cytoplasmic Membrane Score: 8.16
    • Cellwall Score: 0.06
    • Extracellular Score: 0.01
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.149
    • Ymax_pos: 11
    • Cmax: 0.174
    • Cmax_pos: 25
    • Smax: 0.322
    • Smax_pos: 1
    • Smean: 0.204
    • D: 0.17
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MNLKAPYAGLRDNLLLTKTGEVWAYYRVRSESISTANYDAKEESKKRMRYFLESIKGYQDFHFEMYDHDLDLRNKFKEISKDFDDEAFNVAEYYSKETIDVLEQELQMITHNSFVMGVKIRELADDAVTLKEILKSTLSDTAERIVSNFGFDVNLDDKILDKYKTFERDLADSFLGIGGERLTENELAYIIRKPFISNATHDVQEESSRRAITDIYNAVIDPTRLSVLEVENDNEKFYTTTVVVDDFPLDMEYTHLFEKAQNMPFPVECHVKAKIINNEKVKKKFDRAKINHKQQAKEKQDTGDSASEDVQDNLFVLNQMEREVTGSGVFIEWVFMFVIKSDDYRDCKRKAKRLMKRLKETQIYAVNPLADQLQLFYQCLHGNDLFINKYWLQRTTATGIAENLFGVSQSLGTKTGFYIGRIDKFIRSVSREEAVASSRDIILFSLLLAAKGIKGAVSDSPHVLITGQTGKGKSFLAKLLWIYTSFFKGQMLYWDPKSEFAEWFDRVTESKEMQEKYPLFINHLKTFKYVTLNYEDSTNYGCLDPIVFLDGIEANEMLKSVFDEIKSFENYHHIETAIYQAISDTVEERENGKKVGSLNVIEKLQNNEDEHVKNAGDLLFEKTQNNILKLVFSDGTNPALNIQEKATILQVKGLDMPKADDDTSSYSTSEKNGITLMLLIGKFLEKFGSRRDVQTTIFIDEGWAFSASRQGKKVGKRIKRTGRSENNSLVFITQSVKDKADDDGGNFGCHFAFDEKDEREDILKSLGLEYSKESPENMEMLKDLKKGQCIFSDFYGRVGKMVVHCPFEEMTEAFRTQEDSASSKAEEKFAM

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]