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NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS01420 [old locus tag: SACOL0280 ]
  • pan locus tag?: SAUPAN001188000
  • symbol: SACOL_RS01420
  • pan gene symbol?: esxD
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS01420 [old locus tag: SACOL0280 ]
  • symbol: SACOL_RS01420
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 321156..321473
  • length: 318
  • essential: unknown other strains

Accession numbers[edit | edit source]

  • Location: NC_002951 (321156..321473) NCBI
  • BioCyc: G1G4B-293 BioCyc
  • MicrobesOnline: see SACOL0280

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGACGTTGAGTGGAAAAATTAGTGTTAAAGCTGAAACGATTGCACATGTTGTAAAAGAA
    TTGGAAAGCATAAGTCAAAAGTATGATGAAATAGCTCAAAACTTTGGAAAAATAGCGCAA
    TTAAATTACTACAGTAGTGAAAAAGCTGCACATTCTATGGAAAATGGCTATAGTAGTGCT
    GCAACAGTCATTAGTGGTCTCAAAGGTCCATTGAGTACACTCGGTGGTGGCGTCATGAAT
    TCAGCACAAAAGTTCTTTGAAGCAGATGAACATTGGGGTACGGAATTTGCCAAGCTTTAC
    TATAATATTGAGGGATAG
    60
    120
    180
    240
    300
    318

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SACOL_RS01420 [old locus tag: SACOL0280 ]
  • symbol: SACOL_RS01420
  • description: hypothetical protein
  • length: 105
  • theoretical pI: 5.61271
  • theoretical MW: 11414.7
  • GRAVY: -0.28381

Function[edit | edit source]

  • TIGRFAM:
    WXG100 family type VII secretion target (TIGR03930; HMM-score: 13)
  • TheSEED: see SACOL0280
  • PFAM:
    no clan defined Dynactin_p22; Dynactin subunit p22 (PF07426; HMM-score: 13)
    DUF5098; Domain of unknown function (DUF5098) (PF17023; HMM-score: 11.8)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.011527
    • TAT(Tat/SPI): 0.001116
    • LIPO(Sec/SPII): 0.001213
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MTLSGKISVKAETIAHVVKELESISQKYDEIAQNFGKIAQLNYYSSEKAAHSMENGYSSAATVISGLKGPLSTLGGGVMNSAQKFFEADEHWGTEFAKLYYNIEG

Experimental data[edit | edit source]

  • experimentally validated: see SACOL0280
  • protein localization: see SACOL0280
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]