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04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS01830 [old locus tag: SACOL0364 ]
  • pan locus tag?:
  • symbol: SACOL_RS01830
  • pan gene symbol?:
  • synonym:
  • product: transcriptional regulator

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS01830 [old locus tag: SACOL0364 ]
  • symbol: SACOL_RS01830
  • product: transcriptional regulator
  • replicon: chromosome
  • strand: +
  • coordinates: 372895..373332
  • length: 438
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (372895..373332) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGGGAAAGGCATCATATGATATTAAGCCAGGTACATTTAAATATATTGAGTCAGAGATA
    TATAACCTACAAGAGAACAAGAAAGAGATAAATAGATTGAGAATGGAGATACTTAACCCA
    ACGAAAGAACTAGACACCAACATTGTGTATGGACCGTTACAAAAAGGAGAGCCAGTTAGA
    ACAACTGAGTTAATGGCGACAAGGTTATTGACTAATAAGATGTTACGTAACTTAGAAGAG
    ATGGTTGAAGCAGTTGAAAGTGAGTACTTAAAGTTACCTGAAGATCATAAGAAAGTAATA
    AGGTTAAAGTATTGGAATAAAGATAAGAAGCTAAAGATAGAACAAATAGGGGATGCTTGT
    CACATGCATCGCAATACAGTTACTACAATACGAAAGAACTTTGTTAAAGCGATAGCGTAT
    CATGCAGGTATCAAATAA
    60
    120
    180
    240
    300
    360
    420
    438

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS01830 [old locus tag: SACOL0364 ]
  • symbol: SACOL_RS01830
  • description: transcriptional regulator
  • length: 145
  • theoretical pI: 9.92748
  • theoretical MW: 17035.8
  • GRAVY: -0.686207

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Genetic information processingMobile and extrachromosomal element functionsProphage functionsphage transcriptional regulator, RinA family (TIGR01636; HMM-score: 61.4)
    Signal transductionRegulatory functionsDNA interactionsphage transcriptional regulator, RinA family (TIGR01636; HMM-score: 61.4)
    RNA polymerase sigma factor, sigma-70 family (TIGR02937; HMM-score: 19.8)
    RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1 (TIGR02984; HMM-score: 14.2)
  • TheSEED:
  • PFAM:
    HTH (CL0123) HTH_23; Homeodomain-like domain (PF13384; HMM-score: 20.2)
    Sigma70_r4; Sigma-70, region 4 (PF04545; HMM-score: 15.8)
    HTH_AraC; Bacterial regulatory helix-turn-helix proteins, AraC family (PF00165; HMM-score: 12.7)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.095
    • Ymax_pos: 30
    • Cmax: 0.103
    • Cmax_pos: 7
    • Smax: 0.113
    • Smax_pos: 21
    • Smean: 0.073
    • D: 0.087
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446435847 NCBI
  • RefSeq: WP_000513702 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MGKASYDIKPGTFKYIESEIYNLQENKKEINRLRMEILNPTKELDTNIVYGPLQKGEPVRTTELMATRLLTNKMLRNLEEMVEAVESEYLKLPEDHKKVIRLKYWNKDKKLKIEQIGDACHMHRNTVTTIRKNFVKAIAYHAGIK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS01830 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]