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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS02095 [old locus tag: SACOL0416 ]
  • pan locus tag?: SAUPAN001884000
  • symbol: SACOL_RS02095
  • pan gene symbol?: fepC
  • synonym:
  • product: iron permease FTR1 family protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS02095 [old locus tag: SACOL0416 ]
  • symbol: SACOL_RS02095
  • product: iron permease FTR1 family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 422036..423718
  • length: 1683
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (422036..423718) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGCTAATAACTGCTGCTATGGTGTGTAGCTTTGGGTTACTGAAAAGTCAGGCAGCAGAA
    CAACAAAGTATTAGTGATGTATATAGTGTGATAACGGATGCGAAATCTGCACTTTCTAAT
    AATTCGATATCGAATGACAATAAGCAGAAAGCAATTGAGCAAGTGGTAAGTGCAGTTAAG
    AAATTATCGCTTGAAGATAATAGTGAAAGTAATGCTGTCAAATCAGATGTGAGAAAGCTT
    GAAGATGCAAAAGCGAATGATAATCAAAAAGATACACTTTCGCAATTAACGAAGTCATTA
    ATTGCTTATGAAGAGAAATTGGCTAGTAAAGATGCGGGTTCTAAAATTAAACTATTGCAA
    CAGCAAGTCGATGCTAAAGATGCTGCGATGACAAAAGCGATTAAAGATAAAAATAAAGCG
    GAATTAGAATCTTTGAACAATAGTTTGAATCAGATTTGGACAAGTAATGAAACAGTGATT
    CGCAATTATGACGCAAATCAATATGGACAAATTGAAGTCGCATTATTACAACTTAGAATT
    GCAATTCATAAGTCACCATTAGATACGGCAAAAGTGTCACATGCTTGGACAACTTTTAAA
    TCAAATATTGATCATGTCGATAAAAAAAGTAATACGTCTGCAAATGATCAATACCATGTA
    TCACAATTAAATGATGCGTTAGAGAAGGCGATTAAAGCTATCGACGACAATCAATTGTCG
    GATGCTGATGCTGCGCTTACACATTTTATAGAAACTTGGCCGTATGTTGAAGGTCAAATT
    CAAACTAAAGACGGTGCTTTGTATACGAAAATTGAAGATAAAATACCATATTATCAAAGT
    GTATTAGACGAACATAATAAAGCACATGTGAAAGATGGTTTAGTAGATTTAAATAACCAA
    ATTAAAGAGGTTGTTGGCCATAGTTATAGCTTCGTCGATGTGATGATTATCTTTTTACGT
    GAAGGGCTAGAAGTGTTGTTAATTGTAATGACATTGACTACCATGACGCGTAATGTAAAA
    GATAAGAAAGGGACTGCAAGTGTGATTGGTGGTGCAATTGCCGGACTTGTACTGAGTATT
    ATCTTAGCAATTACGTTTGTAGAAACTTTAGGGAATAGTGGCATTCTTCGTGAAAGTATG
    GAAGCGGGATTAGGTATCGTTGCGGTCATATTAATGTTTATCGTTGGTGTTTGGATGCAC
    AAACGTTCAAATGCAAAACGTTGGAATGACATGATTAAAAATATGTATGCTAATGCGATT
    AGTAATGGTAATTTGGTATTGTTAGCGACGATTGGTTTAATATCTGTGTTGCGTGAAGGT
    GTCGAGGTTATCATTTTCTATATGGGGATGATAGGTGAGCTAGCGACCAAAGATTTTATT
    ATTGGTATTGCTTTAGCTATCGTTATTTTAATCATCTTTGCATTATTATTTAGATTTATA
    GTTAAATTAATACCTATTTTCTATATATTTAGAGTGTTGTCGATCTTTATTTTTATTATG
    GGATTCAAAATGCTTGGCGTAAGTATTCAAAAGTTACAATTATTAGGTGCGATGCCAAGA
    CATGTTATTGAAGGATTCCCAACGATTAACTGGTTGGGCTTTTATCCAAGTTATGAACCA
    TTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAA
    TAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1683

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS02095 [old locus tag: SACOL0416 ]
  • symbol: SACOL_RS02095
  • description: iron permease FTR1 family protein
  • length: 560
  • theoretical pI: 7.82963
  • theoretical MW: 62087.9
  • GRAVY: 0.1775

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Unknown functionGeneralFTR1 family protein (TIGR00145; HMM-score: 89.8)
  • TheSEED:
  • PFAM:
    MFS (CL0015) FTR1; Iron permease FTR1 family (PF03239; HMM-score: 71.1)
    no clan definedTim17; Tim17/Tim22/Tim23/Pmp24 family (PF02466; HMM-score: 15)
    MNHE; Na+/H+ ion antiporter subunit (PF01899; HMM-score: 9.8)
    CCDC84; Coiled coil protein 84 (PF14968; HMM-score: 6.8)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • LocateP:
  • SignalP: Signal peptide length 19 aa
    • Ymax: 0.461
    • Ymax_pos: 19
    • Cmax: 0.339
    • Cmax_pos: 19
    • Smax: 0.87
    • Smax_pos: 18
    • Smean: 0.658
    • D: 0.538
  • predicted transmembrane helices (TMHMM): 6

Accession numbers[edit source | edit]

  • GI:
  • RefSeq: WP_002869272 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MLITAAMVCSFGLLKSQAAEQQSISDVYSVITDAKSALSNNSISNDNKQKAIEQVVSAVKKLSLEDNSESNAVKSDVRKLEDAKANDNQKDTLSQLTKSLIAYEEKLASKDAGSKIKLLQQQVDAKDAAMTKAIKDKNKAELESLNNSLNQIWTSNETVIRNYDANQYGQIEVALLQLRIAIHKSPLDTAKVSHAWTTFKSNIDHVDKKSNTSANDQYHVSQLNDALEKAIKAIDDNQLSDADAALTHFIETWPYVEGQIQTKDGALYTKIEDKIPYYQSVLDEHNKAHVKDGLVDLNNQIKEVVGHSYSFVDVMIIFLREGLEVLLIVMTLTTMTRNVKDKKGTASVIGGAIAGLVLSIILAITFVETLGNSGILRESMEAGLGIVAVILMFIVGVWMHKRSNAKRWNDMIKNMYANAISNGNLVLLATIGLISVLREGVEVIIFYMGMIGELATKDFIIGIALAIVILIIFALLFRFIVKLIPIFYIFRVLSIFIFIMGFKMLGVSIQKLQLLGAMPRHVIEGFPTINWLGFYPSYEPLIAQGAYIMVVAILIFKFKK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS02095 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]