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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS03325 [old locus tag: SACOL0644 ]
  • pan locus tag?: SAUPAN002446000
  • symbol: SACOL_RS03325
  • pan gene symbol?: tsaI1
  • synonym: tsaI
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS03325 [old locus tag: SACOL0644 ]
  • symbol: SACOL_RS03325
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 675535..676140
  • length: 606
  • essential: unknown other strains

Accession numbers[edit | edit source]

  • Location: NC_002951 (675535..676140) NCBI
  • BioCyc: G1G4B-690 BioCyc
  • MicrobesOnline: see SACOL0644

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATTAATAAAAATCCGAGATATAAAGTCGTTCAATATAATGATGAGTATTTGTTAATTGAT
    TTAGTAAGCACTTGGCTTGTATACTTTTTTCCTTTTATTAATTGGTTCATTCCCAAAAGG
    TATGCAAAACTTAGTGAGAAGGAACTTGAAAATTTAAATGTTGATAAACAAAATAAAAAT
    AATATTTTCTGGCCAGTTACTGGTAGTTCGTTTTTATTTGTAGTTATTTTACGGAAATAT
    GTACATACGTTTGAAGTTCAATTAGATAATAAGATTTTAATATCTTTATGTTTTATAGGA
    TTTATAGGTATTGCAGCATTTTACATTTACTTAAATAAAAAGCTTAAACTAAAGATATAT
    GATGATAATCTAGATAATGAAAATAGGGTTATATTAGTGCCTACTTTTAAAGATGGAAGT
    TTTATAGTTTTCACATATCTATTATTAGGAGGTTGTTCTATATTATTTTTAATATGGCTA
    ATGACTATAAAACCTCAAAATCTACTGGTATTTATTATGTGGATTATTATTACAATTTTT
    TTCTTTCTAATAAGCATGGGCTCAATTAGTAATAAAAAGGTTTATGCCAAACTTAAAAAG
    CAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    606

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SACOL_RS03325 [old locus tag: SACOL0644 ]
  • symbol: SACOL_RS03325
  • description: hypothetical protein
  • length: 201
  • theoretical pI: 9.9557
  • theoretical MW: 23861.3
  • GRAVY: 0.40199

Function[edit | edit source]

  • TIGRFAM:
    tandem five-TM protein (TIGR01218; HMM-score: 181.7)
  • TheSEED: see SACOL0644
  • PFAM:
    no clan defined DUF443; Protein of unknown function (DUF443) (PF04276; HMM-score: 189.7)
    and 3 more
    DUF4191; Domain of unknown function (DUF4191) (PF13829; HMM-score: 13.7)
    ClpS; ATP-dependent Clp protease adaptor protein ClpS (PF02617; HMM-score: 13.4)
    DUF4131; Domain of unknown function (DUF4131) (PF13567; HMM-score: 9.2)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.015013
    • TAT(Tat/SPI): 0.000663
    • LIPO(Sec/SPII): 0.000695
  • predicted transmembrane helices (TMHMM): 5

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MNKNPRYKVVQYNDEYLLIDLVSTWLVYFFPFINWFIPKRYAKLSEKELENLNVDKQNKNNIFWPVTGSSFLFVVILRKYVHTFEVQLDNKILISLCFIGFIGIAAFYIYLNKKLKLKIYDDNLDNENRVILVPTFKDGSFIVFTYLLLGGCSILFLIWLMTIKPQNLLVFIMWIIITIFFFLISMGSISNKKVYAKLKKQ

Experimental data[edit | edit source]

  • experimentally validated: see SACOL0644
  • protein localization: see SACOL0644
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]