From AureoWiki
Jump to: navigation, search
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS04255 [old locus tag: SACOL0828 ]
  • pan locus tag?: SAUPAN002682000
  • symbol: SACOL_RS04255
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS04255 [old locus tag: SACOL0828 ]
  • symbol: SACOL_RS04255
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 853270..854709
  • length: 1440
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (853270..854709) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    ATGGCGCAAAAGAATAATAATGTAATTCCAATGACTTTTGATGATGCATTTTATCGTAAA
    ATGGCTAAACAGAAGTTTAAACAAAGAGAATATAAACGAGCTGCTGAATACTTTGAAAAA
    GTGTTAGAATTGTCACCTGATGATATGGAAATTCAAATTGATTATGCACAATGTCTAGTG
    CAACTTGGTATTGCTAAAAAAGCAGAACATTTATTTTATGACAATATTATTTATAATAGG
    CATCTAGAAGATAGCTTTTATGAATTGAGTCAGCTCAACATTGAAGTTAACGAACCAAAC
    AAGGCATTCTTGTTTGGTATTAATTATGTTATTGTTAGCGACGACCAAGATTATAGAGAT
    GAATTAGATCAAATGTTTGATGTGAAATATCAAAGTGAAGAACAAATTGAACTTGAAGCT
    CAATTGTTTGTAGTTCAAATACTATTCCAATATCTTTTTTCTCAAGGTCGATTAAAAGAT
    GCAAAGAATTATGTCTTACATCAACCACAAGAAGTTCAAGATCATCGTGTAGTACGTAAT
    TTATTGGCAATGTGTTATTTATATCTCGGTGAATATGATAGGGCTAAAGCATTGTACGAA
    GCACTATTACAAGAGGATAGTACAGATATATATGCATTATGCCATTATACTTTGCTACTT
    TATAACACTAAGGAAAATGAACAATATCAAAAATATTTAAAAATATTAAACAAAGTTGTA
    CCTATGAATGACGATGAAAGTTTTAAATTAGGTATTGTATTAAGTTATTTAAAGCAGTAT
    CGTGCATCACAACAATTGTTGTACCCTTTATATAAAAAAGGGAAATTTTTATCAATTCAA
    ATGTACAATGCTTTAGCATATAATTATTATTATTTAGGTGAAGAAGACGAAAGTCATTAC
    TACTGGGATAAATTGAAGCAAATTTCTAAAGTGGAAATTGGACATGCGCCTTGGGTAATT
    GAAAATAGCAAAGAAGTTTTTGACCAACATATTTTGCCATTACTTCAAAGTGATGACAGT
    CATTATCGTTTATATGGTATTTTTTTATTGGATCAATTAAATGGTAAAGAAATTGTGATG
    ACGGAAAGTATTTGGCAGGTTTTGGAAAATCTAAATAATTATGAGAAATTGTATTTAACG
    TATTTAGTTCAAGGTTTAACGCTCAATAAATTAGACTTCATTCATCGCGGCTTATTAACG
    CTTTACCATAATGAATTATTTGTAAGTGAAAATGATGTAATGGTTGCATGGATTAATCAA
    GGTGAACTCATAATTGCTGAAAAAGTAGATTTAACTGATGTTGAGCCATATATCGGTGCG
    TTTATTTATTTGTATTTTAAAAATCAACCTCGAAACGTTACAAAGAAGCAAATTACAACA
    TGGTTAGGCATAACACAATATAAACTGAACAAAATGATTGAATTTCTCTTGAGCATATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS04255 [old locus tag: SACOL0828 ]
  • symbol: SACOL_RS04255
  • description: hypothetical protein
  • length: 479
  • theoretical pI: 4.88248
  • theoretical MW: 57134
  • GRAVY: -0.343006

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    putative PEP-CTERM system TPR-repeat lipoprotein (TIGR02917; HMM-score: 36.8)
    type IV pilus biogenesis/stability protein PilW (TIGR02521; HMM-score: 21.3)
    type III secretion low calcium response chaperone LcrH/SycD (TIGR02552; HMM-score: 18.9)
    Unknown functionGeneralheme biosynthesis-associated TPR protein (TIGR00540; HMM-score: 12)
  • TheSEED:
  • PFAM:
    TPR (CL0020) TPR_19; Tetratricopeptide repeat (PF14559; HMM-score: 53)
    TPR_2; Tetratricopeptide repeat (PF07719; HMM-score: 38.3)
    TPR_14; Tetratricopeptide repeat (PF13428; HMM-score: 37.7)
    TPR_16; Tetratricopeptide repeat (PF13432; HMM-score: 34.9)
    ANAPC3; Anaphase-promoting complex, cyclosome, subunit 3 (PF12895; HMM-score: 34)
    TPR_7; Tetratricopeptide repeat (PF13176; HMM-score: 28.3)
    TPR_12; Tetratricopeptide repeat (PF13424; HMM-score: 28.1)
    TPR_1; Tetratricopeptide repeat (PF00515; HMM-score: 26.7)
    Fis1_TPR_C; Fis1 C-terminal tetratricopeptide repeat (PF14853; HMM-score: 23.9)
    TPR_6; Tetratricopeptide repeat (PF13174; HMM-score: 21.8)
    TPR_8; Tetratricopeptide repeat (PF13181; HMM-score: 20.4)
    TPR_10; Tetratricopeptide repeat (PF13374; HMM-score: 20.1)
    TPR_9; Tetratricopeptide repeat (PF13371; HMM-score: 17.4)
    TPR_17; Tetratricopeptide repeat (PF13431; HMM-score: 15.7)
    TPR_15; Tetratricopeptide repeat (PF13429; HMM-score: 13.9)
    no clan definedImpA_N; ImpA, N-terminal, type VI secretion system (PF06812; HMM-score: 12.7)
    TPR (CL0020) Alkyl_sulf_dimr; Alkyl sulfatase dimerisation (PF14863; HMM-score: 12.4)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.109
    • Ymax_pos: 68
    • Cmax: 0.132
    • Cmax_pos: 68
    • Smax: 0.147
    • Smax_pos: 11
    • Smean: 0.086
    • D: 0.1
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 445979693 NCBI
  • RefSeq: WP_000057548 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDMEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDRAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYHNELFVSENDVMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS04255 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]