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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS05760 [old locus tag: SACOL1128 ]
  • pan locus tag?: SAUPAN003346000
  • symbol: SACOL_RS05760
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS05760 [old locus tag: SACOL1128 ]
  • symbol: SACOL_RS05760
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1139140..1140177
  • length: 1038
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (1139140..1140177) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGAAAAAGTTAATTATAAGAGTCGTCGGTGTATTATTTTTAGTTGGATTTTTAATATAT
    CTTTTTTATTCACCGAGATTAAAATTTGATGTATTAGAGAACCCGAATAAAGGTAATAAA
    GTAAATAGATCTGAACAGGTGAATAAATCAAATAACCATGCTGAAAATCCAAAGCCTAAA
    GAAGGTGTTGGTACATGGGTAGGTAAAGATATTAAAGTGCTTACTTCTAAATTTGGACAA
    GCAGATCGTGTCTACCCTTTTAGAGATGGTTACAAAAATTATGTGTTTAAAGACAAAAAC
    AGTTATTACATTGTTTCAACTAAACGTGAAGAAATCGTTTCAGTGTATGCTACAGGTGAG
    AAAGTCAATGTTAGTCCGTTAAAAATAGGACAACATTCTGCAGAAATTTTTAATCATACA
    AGTATTAATCCAGAACCGTCCTTTAAAGTTGATGGTAAAAAATATGAATTTGAACTTTCA
    GATGAAGATTTAAAAACACAAACACTGATTAAATATGGCGACATATATGCACAAGTGTAT
    TCTGATCAACAATCGAAAAAGGTGCTAAGTGTACGATTTTTAACAAAAGAAATGTTAGCA
    GATATTGAACCTTATCAATTAAATTCTAATTCTACGTCAGAAGAGCATAATAAGCGTCCA
    GTTGAGCAAAATCCAAATCAATTAATTTCTCTTTATGAAGTAACGAATGAAATGAGAAAA
    TTAAAAGGATTAAAACCATTGAAAATCAATAGCGATTTAGCACATATTGCATCTAATAAC
    TTATATGAAGCGACCTCTAATGGTTCTGATAGTGTTGAATTTACAGAGGACGCATTAAGA
    GGGCAATTAGATAAAAATCACGTTACTTATAAAACAACTGCTCAAAATGTTGGTTATGCG
    TTTAATGATGTACCAACATTAATCCATAGTTGGATGAATTCAGATATACATCGATCTCGT
    CTATTAAATTCAAAATACGATGAGATGGGTGGAGATGTAATGAGAGATTATTATTCACTA
    ATTTTCTTAGAAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1038

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS05760 [old locus tag: SACOL1128 ]
  • symbol: SACOL_RS05760
  • description: hypothetical protein
  • length: 345
  • theoretical pI: 9.05924
  • theoretical MW: 39612.5
  • GRAVY: -0.626377

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    uncharacterized protein, YkwD family (TIGR02909; HMM-score: 44.8)
  • TheSEED:
  • PFAM:
    no clan definedCAP_assoc_N; CAP-associated N-terminal (PF14504; HMM-score: 140)
    CAP (CL0659) CAP; Cysteine-rich secretory protein family (PF00188; HMM-score: 40.7)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.229
    • Ymax_pos: 11
    • Cmax: 0.119
    • Cmax_pos: 29
    • Smax: 0.699
    • Smax_pos: 1
    • Smean: 0.486
    • D: 0.33
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit source | edit]

  • GI: 446656063 NCBI
  • RefSeq: WP_000733409 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MKKLIIRVVGVLFLVGFLIYLFYSPRLKFDVLENPNKGNKVNRSEQVNKSNNHAENPKPKEGVGTWVGKDIKVLTSKFGQADRVYPFRDGYKNYVFKDKNSYYIVSTKREEIVSVYATGEKVNVSPLKIGQHSAEIFNHTSINPEPSFKVDGKKYEFELSDEDLKTQTLIKYGDIYAQVYSDQQSKKVLSVRFLTKEMLADIEPYQLNSNSTSEEHNKRPVEQNPNQLISLYEVTNEMRKLKGLKPLKINSDLAHIASNNLYEATSNGSDSVEFTEDALRGQLDKNHVTYKTTAQNVGYAFNDVPTLIHSWMNSDIHRSRLLNSKYDEMGGDVMRDYYSLIFLEK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS05760 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]